View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_14 (Length: 430)
Name: NF5629_high_14
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 35399170 - 35398771
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcg |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35399170 |
atactcaaaacctagatgctacaaacctaaaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcg |
35399071 |
T |
|
| Q |
113 |
aactgcatatcttaagattctattcagaaatcagattggtagagtagagcaaaataatgttaataattgatttaatttgttttagagaaataattgagtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35399070 |
aactgcatatcttaagattctattcagaaatcagattggtagagtagggcaaaataatgttaataattgatttaatttgttttagagaaataattgagtt |
35398971 |
T |
|
| Q |
213 |
aattaatctacatgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398970 |
aattaatctacatgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaa |
35398871 |
T |
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| Q |
313 |
gtagaactagttatttaatctattgtcatgcattcaaagcacagcctatgcacttgtgtgggatagagaaaaaacataattgacaaaaatcagaatttac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398870 |
gtagaactagttatttaatctattgtcatgcattcaaagcacagcctatgcccttgtgtgggatagagaaaaaacataattgacaaaaatcagaatttac |
35398771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 11321316 - 11321405
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacata |
102 |
Q |
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|||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||| | ||||| |||||||||| |
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| T |
11321316 |
atactcaaaacctagatgctacaagcctacatcacatcacgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacata |
11321405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9323782 - 9323690
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaac |
105 |
Q |
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|||||||||| |||||| ||||| || ||| ||||| || || | | |||||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
9323782 |
atactcaaaatatagatgttacaagccaacatcacatcacaaatgcgccaattataaggcagagcaaaatcgcaatatcacttaaatataaac |
9323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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