View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_20 (Length: 375)
Name: NF5629_high_20
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 34533013 - 34533370
Alignment:
| Q |
1 |
aagtgaatagactcctacgttaaattaagaatttggatgaatatttacagtgttcaaaccacatgcgtgtttgctaatgtaataatccttcgctgtttta |
100 |
Q |
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| T |
34533013 |
aagtgaatagactcctacgttaaattaagaatttggatgaatatttacagtgttcaaaccacatgtgtgtttgctaatgtaataatccttcgctgtttta |
34533112 |
T |
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| Q |
101 |
ggttttcatcgaatcacaaacatctattatgtacattaaagctttgaatgtgtaatgtcttgtacggcatatggcacattggttttgtttcatatattgt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34533113 |
ggttttcatcgtatcacaaacatctattatgtacattaaagctttgaatgtgtaatgtcttgtacggcatatggcacattggttttgtttcatatgttgt |
34533212 |
T |
|
| Q |
201 |
gttcaacgcaatattttatttcatacggcatatatatggtattattgattaatgtaattaatacacaagaaagattgtaaccaaaacagtaaggaagtaa |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34533213 |
gttcaacgcaatattttattccatacggcatatatatggtattattgattaatgtaattaatacacaggaaagattgtaaccaaaacagtaaggaagtaa |
34533312 |
T |
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| Q |
301 |
aagaagaatctgcaattcataaatctaaaaatgttacaaattagatacagcaatagat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34533313 |
aagaagaatctgcaattcataaatctaaaaatgttacaaattagatacagcaatagat |
34533370 |
T |
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