View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_24 (Length: 365)
Name: NF5629_high_24
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 3469936 - 3470267
Alignment:
| Q |
16 |
attggaaagtcggcgaggcattaggcgtaccagaaggaacagttcccgacaaagaattgttttggatgtctagaacttccaaatgtgcaatattggctag |
115 |
Q |
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| T |
3469936 |
attggaaagtcggcgaggcattaggcgtaccagaaggaacagttcccgacaaagaattgttttggatgtctagaacttccaaatgtgcaatattggctag |
3470035 |
T |
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| Q |
116 |
agttgctggaatagcaccactgaaattgttgaagctcaaatttagcctgcttagattttccaagttccctaagctaagaggaatttgaccagttaacttg |
215 |
Q |
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| T |
3470036 |
agttgctggaatagcaccactgaaattgttgaagctcaaatttagcctgcttagattttccaagttccctaagctaagaggaatttgaccagttaacttg |
3470135 |
T |
|
| Q |
216 |
ttatattgcaaagcaagagttgtaagttgcttcaaggaacccatctgtgtaggtatattccctaccaattgattatctcccaactgaagtactgcataaa |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3470136 |
ttatattgcaaagcaagagttgtaagttgctttaaggaacccatctgtgtaggtatattccctaccaattgattatctcccaactgaagtactgcataaa |
3470235 |
T |
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| Q |
316 |
caattcaaaatcaatttgtcgccacacaacca |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3470236 |
caattcaaaatcaatttgtcgccacacaacca |
3470267 |
T |
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