View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_26 (Length: 357)
Name: NF5629_high_26
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 36950748 - 36951075
Alignment:
| Q |
19 |
attgcatcatttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattcaaaaacaataacaaagtctttg |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
36950748 |
attgcatcgtttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattaaaaaa--ataacaaagtctttg |
36950845 |
T |
|
| Q |
119 |
ttttctctatcttgatcttccttgtaatcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcg |
218 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36950846 |
ttttctctatcttgatcttccttgtaaccccgactctaatagccgcagaatgcacatgcgataaagaagatgaagatagagacaaatccaaagcccttcg |
36950945 |
T |
|
| Q |
219 |
ttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36950946 |
ttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgataccggcgttaagccctgaaaaa |
36951045 |
T |
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| Q |
319 |
gatatatttttcatcatcaaagcctttgct |
348 |
Q |
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|||||||||||||| || |||||||||||| |
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| T |
36951046 |
gatatatttttcattattaaagcctttgct |
36951075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 36938521 - 36938850
Alignment:
| Q |
19 |
attgcatcatttcatcactagttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattcaaaaacaataacaaagtctttg |
118 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36938521 |
attgcatcgtttcatcacttgttccctgcaccgatcactcccatatgctttgagtttctaaccattgaaatgggattaaaaaacaataacaaagtctttg |
36938620 |
T |
|
| Q |
119 |
ttttctctatcttgatcttccttgtaatcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcg |
218 |
Q |
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|||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| || ||| || ||||| ||||||||||||| ||||||| ||||| |
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| T |
36938621 |
ttttctctatcttgatattccttataatcccgactctaatagccgccgaatgcacgtgtgatgaagaagatttagatagagacaaacccaaagctcttcg |
36938720 |
T |
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| Q |
219 |
ttataagatagcagctttagtatcaatactagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaa |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
36938721 |
ttataagatagcagctttagtatcaatattagttgcaagtggaattggtgtttgtattccacttcttggcaaagtgataccggcgttaagccccgaaaaa |
36938820 |
T |
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| Q |
319 |
gatatatttttcatcatcaaagcctttgct |
348 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
36938821 |
gatatatttttcatcatcaaagcctttgct |
36938850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 66 - 348
Target Start/End: Original strand, 36955280 - 36955562
Alignment:
| Q |
66 |
ctttgagtttctaaccattgaaatgggattcaaaaacaataacaaagtctttgttttctctatcttgatcttccttgtaatcccgactgtaatagccgca |
165 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |||||||| ||| ||||||||||| |
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| T |
36955280 |
ctttgggtttctaacaattgaaatgggattcaaaaacaatatcaaagtcttagttttttctgtcttgatcttcctcgtaatcccaactctaatagccgca |
36955379 |
T |
|
| Q |
166 |
gaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaatactagttgcaagtggaattg |
265 |
Q |
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||||||||||| ||| | |||||||||||||||||||| |||||||| | ||||| || |||||||||||||| ||||| |||||| ||||| ||||| |
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| T |
36955380 |
gaatgcacatgtgatgaggaagatgaagatagagacaaagccaaagccttacgttacaaaatagcagctttagtgtcaattttagttgtaagtgcaattg |
36955479 |
T |
|
| Q |
266 |
gtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagcctttgct |
348 |
Q |
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|||||| ||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
36955480 |
gtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgct |
36955562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 348
Target Start/End: Original strand, 36993041 - 36993243
Alignment:
| Q |
146 |
tcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaat |
245 |
Q |
| |
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|||| ||| ||||||| ||||| |||||||| || || |||||||||| || |||| ||| ||||| || || || || ||||| |||||||| ||||| |
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| T |
36993041 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
36993140 |
T |
|
| Q |
246 |
actagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagccttt |
345 |
Q |
| |
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| |||||||||||| ||||||||||||| | |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
36993141 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
36993240 |
T |
|
| Q |
346 |
gct |
348 |
Q |
| |
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||| |
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| T |
36993241 |
gct |
36993243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 348
Target Start/End: Original strand, 37018481 - 37018683
Alignment:
| Q |
146 |
tcccgactgtaatagccgcagaatgcacatgcgataaaaaagatgaagatagagacaaatccaaagcccttcgttataagatagcagctttagtatcaat |
245 |
Q |
| |
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|||| ||| ||||||| ||||| |||||||| || || |||||||||| || |||| ||| ||||| || || || || ||||| |||||||| ||||| |
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| T |
37018481 |
tcccaactctaatagctgcagagtgcacatgtgacgaagaagatgaagaaagggacagatcaaaagctctacgctacaaaatagcggctttagtgtcaat |
37018580 |
T |
|
| Q |
246 |
actagttgcaagtggaattggtgtttgtattccacttctaggcaaagtgatacccgcgttaagccctgaaaaagatatatttttcatcatcaaagccttt |
345 |
Q |
| |
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| |||||||||||| ||||||||||||| | |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
37018581 |
attagttgcaagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcattt |
37018680 |
T |
|
| Q |
346 |
gct |
348 |
Q |
| |
|
||| |
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| T |
37018681 |
gct |
37018683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 36951438 - 36951405
Alignment:
| Q |
315 |
aaaagatatatttttcatcatcaaagcctttgct |
348 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
36951438 |
aaaagatatatttttcatcattaaagcctttgct |
36951405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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