View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_34 (Length: 305)
Name: NF5629_high_34
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34951658 - 34951366
Alignment:
| Q |
1 |
aacatcacaactccttgtctctgacactgatcattgtttatcttcgatggttcggttactgaacactccaactcttgttgacgcgtacaatcatttaggg |
100 |
Q |
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| T |
34951658 |
aacatcacaactccttgtctctgacactgatcattgtttatcttcaatggttcggttgctgaacactccaactcttgttgacgcgtacaatcatttaggg |
34951559 |
T |
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| Q |
101 |
aaatggacttgtggagaggatctcacaattgttgagactgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagtt |
200 |
Q |
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| T |
34951558 |
aaatggacttgtggagaggatctcacaattgttgagaccgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagtt |
34951459 |
T |
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| Q |
201 |
ttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatg |
293 |
Q |
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| T |
34951458 |
ttaatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatg |
34951366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34947187 - 34946895
Alignment:
| Q |
1 |
aacatcacaactccttgtctctgacactgatcattgtttatcttcgatggttcggttactgaacactccaactcttgttgacgcgtacaatcatttaggg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||| || |||||| | ||||||||||||||||| |
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| T |
34947187 |
aacatcacaactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacattccacctattgttggctcgtacaatcatttaggg |
34947088 |
T |
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| Q |
101 |
aaatggacttgtggagaggatctcacaattgttgagactgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagtt |
200 |
Q |
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| T |
34947087 |
aaatggacttgtggagaggatctcacaattgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagactt |
34946988 |
T |
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| Q |
201 |
ttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34946987 |
ttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatg |
34946895 |
T |
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