View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_39 (Length: 287)
Name: NF5629_high_39
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 8795780 - 8796023
Alignment:
| Q |
5 |
gtctctcaagtattatatagttgaaaatttgactttctaatttatataatgtgtannnnnnnn-----agtttcttgtatattctctttattggaggtaa |
99 |
Q |
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| T |
8795780 |
gtctctcaagtattatatagttgaaaatttgactttctaatttatataatgtgtatttttttttttttagttttttgtatattctctttattggaggtaa |
8795879 |
T |
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| Q |
100 |
ttctatttgtgaagatgaattttgattcgtcacattagagaaaactaatannnnnnnn-ggatctaatcccaactgatata--tatgtgtatttaattac |
196 |
Q |
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| T |
8795880 |
ttttatttgtgatgatggattttgatttgtcacattagagaaaactaatacctttttttggatctaatcccaactgatatagatatgtgtatttaatcac |
8795979 |
T |
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| Q |
197 |
atacaatgaaaattatcaaatttttaaataaatttcaatatctt |
240 |
Q |
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| T |
8795980 |
atacaatgaaaattatcaaatttttaaataaatttcaatatctt |
8796023 |
T |
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