View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_53 (Length: 243)
Name: NF5629_high_53
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42855053 - 42854825
Alignment:
| Q |
1 |
ttaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaatacca |
100 |
Q |
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| T |
42855053 |
ttaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaatacca |
42854954 |
T |
|
| Q |
101 |
t-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaaggacata |
199 |
Q |
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| T |
42854953 |
tgatatatcttatgcacatattatattgtatctgagtcaaaaaacaaaggcaggtcgaacatccattgacagagagtaatctaattgacttaaggacata |
42854854 |
T |
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| Q |
200 |
tatactgcagtgatcctaatcaataactt |
228 |
Q |
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| T |
42854853 |
tatactgcagtgatcctaatcaataactt |
42854825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 42848504 - 42848269
Alignment:
| Q |
5 |
ttggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaatacc---at |
101 |
Q |
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| T |
42848504 |
ttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaaatgtaaagtatttattattgctaatcgacaagaatgaaaaagaatatcatgat |
42848405 |
T |
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| Q |
102 |
atatatcttatg--catatattatattgtatctgagtcaaaaaaca-------aaagcaggtcgaacatccattgacagagagtaatctaattgacttaa |
192 |
Q |
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| T |
42848404 |
atacatctcatgcacatatattatattgtatcagagtcaaaaaaaaaaaaaacaaagcaggtggaacacccgtagacagagagtaatctaattgacttaa |
42848305 |
T |
|
| Q |
193 |
ggacatatatactgcagtgatcctaatcaataactt |
228 |
Q |
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| T |
42848304 |
ggacatatatactgcagtgatcctaatcaataactt |
42848269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 42856690 - 42856466
Alignment:
| Q |
2 |
taattggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaatacca |
100 |
Q |
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| T |
42856690 |
taattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg--------ttagatcgaaaaagaatatca |
42856599 |
T |
|
| Q |
101 |
t-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg----a |
195 |
Q |
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| T |
42856598 |
tgacatatcttacgcacttattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtaatgtaattgactcaatgatata |
42856499 |
T |
|
| Q |
196 |
catatatactgcagtgatcctaatcaataactt |
228 |
Q |
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| T |
42856498 |
tatatatactgcagtgatcctaatcaataactt |
42856466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 42860767 - 42860697
Alignment:
| Q |
2 |
taattggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattg |
71 |
Q |
| |
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| T |
42860767 |
taattggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42860697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 42853090 - 42852930
Alignment:
| Q |
75 |
atcgacaagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagt--caaaaaacaaaagcaggtcgaacatccattgacag |
171 |
Q |
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| T |
42853090 |
atcgacaagaatgaaaaagaataacgtgatatatcttatgcacatattatatcgtatcttcgtaaaaaaaaaccaaagcatgtggaacacacatagacag |
42852991 |
T |
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| Q |
172 |
agagtaatctaattgactta----aggacatatatactgcagtgatcctaatcaataactt |
228 |
Q |
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||| ||||||||| |||||| | ||||||| ||||| ||| |||| |||||||||||| |
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| T |
42852990 |
agattaatctaatcgacttaattcatgacatatgtactgtagtaatccaaatcaataactt |
42852930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 27202 - 27095
Alignment:
| Q |
79 |
acaagaatgagaaagaataccat-atatatcttatgcatatattatattgtatctgagtc-aaaaaacaaaagcaggtcgaacatccattgacagagagt |
176 |
Q |
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|||||||||| ||||||||||| |||||||||||||| |||||| ||||||||| | | ||||||| ||||||||| ||||| || ||||| |||| |
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| T |
27202 |
acaagaatgaaaaagaataccacgatatatcttatgcacatattacattgtatctcggacaaaaaaaccaaagcaggtggaacactaatagacagtgagt |
27103 |
T |
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| Q |
177 |
aatctaat |
184 |
Q |
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|||||||| |
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| T |
27102 |
aatctaat |
27095 |
T |
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