View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_54 (Length: 240)
Name: NF5629_high_54
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_54 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 28012727 - 28012878
Alignment:
| Q |
89 |
taactatttaaaaagatgtagagattaataggttaaggagaattattttattttattttaaagaagttaaggagnnnnnnnnnnatgaaaggttaaagag |
188 |
Q |
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| T |
28012727 |
taactatttaaaaagatggagaaattaataggttaaggagaattattttattttattttaaagaagttaaggagatttttttttatgaaaggttaaagag |
28012826 |
T |
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| Q |
189 |
aatgttaaatagtgctccacggacattggttaagcaaccaaaggaattaagt |
240 |
Q |
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| T |
28012827 |
aatgttaaatagtgcttcagggatactggttaaacaatcaaaggaattaagt |
28012878 |
T |
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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 41760481 - 41760437
Alignment:
| Q |
186 |
gagaatgttaaatagtgctccacggacattggttaagcaaccaaa |
230 |
Q |
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| T |
41760481 |
gagaatgttaaatagtgtttcatggacattggttaagcatccaaa |
41760437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 19781504 - 19781460
Alignment:
| Q |
186 |
gagaatgttaaatagtgctccacggacattggttaagcaaccaaa |
230 |
Q |
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| T |
19781504 |
gagaatgttaaacagtgctcctggggcattggttaagcaaccaaa |
19781460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 27082282 - 27082326
Alignment:
| Q |
186 |
gagaatgttaaatagtgctccacggacattggttaagcaaccaaa |
230 |
Q |
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| T |
27082282 |
gagaatgctaaatagtgccccaaggacattggttaaacaaccaaa |
27082326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 20775043 - 20775087
Alignment:
| Q |
186 |
gagaatgttaaatagtgctccacggacattggttaagcaaccaaa |
230 |
Q |
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| T |
20775043 |
gagaatgctaaatagtgctccaaagacattggttaagcatccaaa |
20775087 |
T |
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