View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_high_6 (Length: 570)
Name: NF5629_high_6
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 239 - 554
Target Start/End: Original strand, 37938715 - 37939027
Alignment:
| Q |
239 |
attgatagagatctcacttagcaggatcgtcaactttctctctcactacaagacaataatgcagccacaagtggtgaaggaccatcaagatcatttaatg |
338 |
Q |
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| T |
37938715 |
attgatagagatctcacttagcaggatcgtcaactttctctctcactacaagacaataatgcagccacaagtggtgaaggaccatcaagatcatttcatg |
37938814 |
T |
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| Q |
339 |
agatctttagtcaaaaaattcaaagaacttcatctccattaccaccaaacaataatattagtgaagatgatagtataagtgagagtgatttgggtttgtc |
438 |
Q |
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| T |
37938815 |
agatctttagtcaaaaaattcaaagaacttcatctccattaccaccaaac---aatattagtgaagatgatagtataagtgagagtgatttgggtttgtc |
37938911 |
T |
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| Q |
439 |
attgaggatgcagacaataagcacgtgtcagggaaataaagaaggcaaaaaagaacaattgggaagttttgaatcagtgcagaataaaatgcaaagggta |
538 |
Q |
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| T |
37938912 |
attgaggatgcagacaataagcacgtgtcagagagatactgaaggcaaaaaagaacagttgggaagttttgaatcagtgcagaataaaatgcaaagggta |
37939011 |
T |
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| Q |
539 |
catgaggtgcctagtg |
554 |
Q |
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| T |
37939012 |
catgaggtgcctagtg |
37939027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 37938604 - 37938643
Alignment:
| Q |
135 |
aagaaaggtaaattcaatctgaatgttaattaattttctt |
174 |
Q |
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| T |
37938604 |
aagaaaggtaaattaaatctgaatgttaattaattttctt |
37938643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 43371042 - 43370980
Alignment:
| Q |
18 |
aggatttgatcgaaccttaaatctctcatttagtcacgttaaaggtgacttgaccaaacaaaa |
80 |
Q |
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| T |
43371042 |
aggatttgatcgaactttaaatctctcatttattcacgttaaaggtgacttgaccaaacaaaa |
43370980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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