View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_high_7 (Length: 552)

Name: NF5629_high_7
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_high_7
NF5629_high_7
[»] chr4 (6 HSPs)
chr4 (68-534)||(41133698-41134182)
chr4 (13-52)||(41133664-41133703)
chr4 (192-256)||(27755738-27755802)
chr4 (192-253)||(36523147-36523208)
chr4 (192-256)||(5428597-5428661)
chr4 (192-256)||(39307715-39307779)
[»] chr1 (3 HSPs)
chr1 (192-256)||(28030860-28030924)
chr1 (192-256)||(6402589-6402653)
chr1 (192-256)||(38153456-38153520)
[»] chr2 (1 HSPs)
chr2 (192-256)||(7799866-7799930)
[»] chr5 (2 HSPs)
chr5 (198-256)||(12007817-12007875)
chr5 (192-256)||(39776649-39776713)
[»] chr7 (2 HSPs)
chr7 (192-256)||(36341639-36341703)
chr7 (192-256)||(41898007-41898071)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 68 - 534
Target Start/End: Original strand, 41133698 - 41134182
Alignment:
Q  68 aaatgaaacgcaacacatagttgaatgataaagagaactatattatcgggtagaaaacatggcatgtaattgaaatacatgtttagggaaggtttcatga 167  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41133698 aaatgaaacgcaacacatagttgactgataaagagaactatattatcgggtaaaaaacatggcatgtaattgaaatacatgtttagggaaggtttcatga 41133797  T
Q  168 tatatgttttgctatacataa----catt-------tagt--aaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatg 254  Q
     |||||||||||||||||||     ||||       ||||  |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| |||    
T  41133798 gatatgttttgctatacatatatagcattactttgttagttaaaaaaagtatgaacaaagtaagtcatgtgaatagtgcacgttacaaaaatgcgatatg 41133897  T
Q  255 taaggaagtatataatttgaaaggtgtaaagaaagtcaacaaatactgtccaatattttatatcttttgggatttaatcgggtgacaaagaaaaattgt- 353  Q
    ||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  41133898 taaagatgtatgtaatttgaaaggtgtaaagaaagtgaacaaatactgtccaatattttatatcttttgggatttaatcgggggacaaagaaaaattgtc 41133997  T
Q  354 ----ttaaacttaaatatagaaaaatgagcaccaattttcttttgacgacaaaactctgattttgtagaattgaattgagatagagacattcattattgt 449  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41133998 taaattaaacttaaatatagaaaaatgagcaccaattttcttttgacgacaaaactctgattttgtagaattgaattgagatagagacattcattattgt 41134097  T
Q  450 tgtctttatattatatgcagtgagagtaagcagccgaaggaatcatgggtagtcacttggagataacagtaataaataaggttgt 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41134098 tgtctttatattatatgcagtgagagtaagcagccgaaggaatcatgggtagtcacttggagataacagtaataaataaggttgt 41134182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 41133664 - 41133703
Alignment:
Q  13 aatatgaaacgcaatacatacggaagtagaaaataaatga 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41133664 aatatgaaacgcaatacatacggaagtagaaaataaatga 41133703  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 27755802 - 27755738
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||| ||||||||||| || | || | ||||| ||||||||||||||||||||    
T  27755802 ttagttaaaaagtatggtcaaaataagttatatgaacaatgtacattacaaaaatgcgacatgta 27755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 36523147 - 36523208
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacat 253  Q
    ||||| |||||||||  ||||| |||||||||||||||||| |  || ||||||||||||||    
T  36523147 ttagttaaaaagtatagtcaaagtaagtcatgtaaatagtgcatattgcaaaaatgcgacat 36523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 5428661 - 5428597
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||| ||||  |||||||||| ||||||| || || | |||||||||||||||    
T  5428661 ttagttaaaaagtatggtcaacgtaagtcatgtgaatagtgcacattgccaaaatgcgacatgta 5428597  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 39307779 - 39307715
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| ||||||||  |||||| |||||||||| ||||| |||  || |||||||||||||||||    
T  39307779 ttagttaaaaagtagcatcaaagtaagtcatgtgaatagggtatattgcaaaaatgcgacatgta 39307715  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 28030860 - 28030924
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||| ||||||||||||||||||||| || || || ||||||||| |||||||    
T  28030860 ttagttaaaaagtatggtcaaaataagtcatgtaaataatgcacattgcaaaaatgcaacatgta 28030924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 6402589 - 6402653
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||| ||||||||||||| || ||||||| || || |||||||  ||||||||    
T  6402589 ttagttaaaaagtatggtcaaaataagtcaagtgaatagtgcacattgcaaaaattggacatgta 6402653  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 38153456 - 38153520
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||| | | | |||||||||| ||||||| || ||| ||||||||||||||||    
T  38153456 ttagttaaaaagtatggtaacagtaagtcatgtgaatagtgcacattataaaaatgcgacatgta 38153520  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 7799930 - 7799866
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||| | ||||| |||||||||| ||||||| || || |||||||||||||||||    
T  7799930 ttagttaaaaagtagggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgcgacatgta 7799866  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 12007817 - 12007875
Alignment:
Q  198 aaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    |||||||| | ||||| |||||||||||||||||| ||  || ||||||||||||||||    
T  12007817 aaaaagtagggtcaaattaagtcatgtaaatagtgcacaatataaaaatgcgacatgta 12007875  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 39776713 - 39776649
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||| | ||||||||||| |||| |||||||||| || ||||||| ||| |||||    
T  39776713 ttagttaaaaagtacggtcaaaataagttatgtgaatagtgtacattgcaaaaatacgaaatgta 39776649  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 36341703 - 36341639
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||  | ||| |||||||||| ||||||| || || |||||||||||||||||    
T  36341703 ttagttaaaaagtatcgttaaattaagtcatgtgaatagtgcacattgcaaaaatgcgacatgta 36341639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 41898071 - 41898007
Alignment:
Q  192 ttagtaaaaaagtatgatcaaaataagtcatgtaaatagtgtacgttacaaaaatgcgacatgta 256  Q
    ||||| |||||||||||||||| ||||||| || ||||||| || || |||||||  ||||||||    
T  41898071 ttagttaaaaagtatgatcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgta 41898007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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