View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_10 (Length: 460)
Name: NF5629_low_10
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 31876846 - 31876557
Alignment:
| Q |
18 |
aaatacacaccctcaatttgctatatagctaaccccaccaaataaacatgacaaagccttcaaactttctccaaaagccatctcccataattgtacaaag |
117 |
Q |
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| T |
31876846 |
aaatacacaccctcaatttgctaaatagctaaccccaccaaataaacatgacaaagccttcaaactttctccaaaagccatctcccataattgtacaaag |
31876747 |
T |
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| Q |
118 |
acaagagaacaagaagatgatgtgcttagatgagcaactacaaagacaattatccaatatctcaaatgaagattaccatggaaacaaatttgcatcaatt |
217 |
Q |
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| T |
31876746 |
acaagagaacaagaagatgatgtgcttagatgagcaactacaaagacaattatccaatatctcaaatgaagattaccatggaaacaaatttgcatcaatt |
31876647 |
T |
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| Q |
218 |
ccatttgtatgggaatctcaaccaggtacacctaaacatagatcaaaccaaaattcacttcctcctctcaccccaccaccatcttatttc |
307 |
Q |
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| T |
31876646 |
ccatttgtatgggaatctcaaccaggtacacctaaacatagatcaaaccaaaattcactccctcctctcaccccaccaccatcttatttc |
31876557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 31876518 - 31876414
Alignment:
| Q |
346 |
gaacttctttttgcaaacactattccacaaacgtactacaaaaaaggatcatgttcttgatcggtctcccgcggcgtcatcaacttttgtctcctattct |
445 |
Q |
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|||||| ||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31876518 |
gaacttttttttacaatcactattccacaagcgtactacaaaaaaggattgtgttcttgatcggtcccccgcggcgtcatcaacttttgtctcctattct |
31876419 |
T |
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| Q |
446 |
tcatc |
450 |
Q |
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| T |
31876418 |
tcatc |
31876414 |
T |
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