View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_13 (Length: 433)
Name: NF5629_low_13
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 79 - 415
Target Start/End: Original strand, 2434238 - 2434565
Alignment:
| Q |
79 |
ctaaatccttacttgaaattaaattaaacgaacaattttggcaatttgtttcatacaaatacgttagataaatgtacaaaccaatgtgtggccagttgta |
178 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2434238 |
ctaaatcgttacttgaaattaaattaaacgaacaattttggcaatttgtttcatacaaatacgttagataaatgtacaaaccaatgtgtggccagttcta |
2434337 |
T |
|
| Q |
179 |
ttagacgtacatgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatggcggaagtgaggaacaagcaagtgattctgaaggactatg |
278 |
Q |
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| T |
2434338 |
t---------atgtacaacacaaacaccacaaagattttagtgacacaattcctgagatggcggaagtgaggaacaagcaagtgattctgaaggactatg |
2434428 |
T |
|
| Q |
279 |
tgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgttgttttgctcaaaaatct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2434429 |
tgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgtggttttgctcaaaaatct |
2434528 |
T |
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| Q |
379 |
gtacttgtcttgtgatccttacatgagactcctgatg |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2434529 |
gtacttgtcttgtgatccttacatgagactcctgatg |
2434565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 141 - 406
Target Start/End: Original strand, 2430712 - 2430976
Alignment:
| Q |
141 |
gttagataaatgtacaaaccaatgtgtggccagttgtattagacgt--acatgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatg |
238 |
Q |
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||||||| |||||||| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
2430712 |
gttagatgaatgtacagacca---tgtggccagttgtattagatgtgtacatgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatg |
2430808 |
T |
|
| Q |
239 |
gcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagc |
338 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||| ||||| ||||||| |
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| T |
2430809 |
gcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtactataactctcaagc |
2430908 |
T |
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| Q |
339 |
ttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgaga |
406 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
2430909 |
ttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgaga |
2430976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 250 - 405
Target Start/End: Complemental strand, 2519370 - 2519215
Alignment:
| Q |
250 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
349 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||| | |
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| T |
2519370 |
gaacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttccacaagct |
2519271 |
T |
|
| Q |
350 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
405 |
Q |
| |
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|||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |
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| T |
2519270 |
tccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatgag |
2519215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 405
Target Start/End: Complemental strand, 2507568 - 2507413
Alignment:
| Q |
250 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
349 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||| |
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| T |
2507568 |
gaacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt |
2507469 |
T |
|
| Q |
350 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
405 |
Q |
| |
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||||||||| ||| ||| | |||||||| |||||||||||||||||||||||||| |
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| T |
2507468 |
tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag |
2507413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 236 - 406
Target Start/End: Original strand, 2427552 - 2427722
Alignment:
| Q |
236 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactca |
335 |
Q |
| |
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|||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||| || | |||| |
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| T |
2427552 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtacaattattctca |
2427651 |
T |
|
| Q |
336 |
agcttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgaga |
406 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||| ||||| |
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| T |
2427652 |
accttccacaaggttccaatgatgttgttctgctcaaaaatctctacttatcctgtgatccttacctgaga |
2427722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 405
Target Start/End: Complemental strand, 2499040 - 2498881
Alignment:
| Q |
243 |
aagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttcc |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||| |||| || || || |||||||| |
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| T |
2499040 |
aagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttcc |
2498941 |
T |
|
| Q |
343 |
acaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
405 |
Q |
| |
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||||||||||||||| |||| |||| |||||| | ||||||||||||||||| | |||||| |
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| T |
2498940 |
acaaggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatccattcatgag |
2498881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 250 - 405
Target Start/End: Complemental strand, 2514658 - 2514503
Alignment:
| Q |
250 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
349 |
Q |
| |
|
|||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||| |
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| T |
2514658 |
gaaccagcaagtgcttctgaaacattatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt |
2514559 |
T |
|
| Q |
350 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
405 |
Q |
| |
|
||||||||| ||| ||| | |||||||| |||||||||||||||||||| ||||| |
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| T |
2514558 |
tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttaaatgag |
2514503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 236 - 406
Target Start/End: Original strand, 1457845 - 1458015
Alignment:
| Q |
236 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactca |
335 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||| || | |||| |
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| T |
1457845 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtacaattattctca |
1457944 |
T |
|
| Q |
336 |
agcttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgaga |
406 |
Q |
| |
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| ||||||||||||||||||||||||||| |||| |||||||| ||||| || |||||||||||| ||||| |
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| T |
1457945 |
accttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatccttacctgaga |
1458015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 11845932 - 11845990
Alignment:
| Q |
296 |
gaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaa |
354 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||| |||||||||| ||||| |
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| T |
11845932 |
gaatcagacatgaacattgttgacagtaccataacattcaaaattccacaaggctccaa |
11845990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 23924962 - 23925020
Alignment:
| Q |
296 |
gaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaa |
354 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| |||| |||||||||| ||||| |
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| T |
23924962 |
gaatcagacatgaacattgttgatagtaccataacattcaaaattccacaaggctccaa |
23925020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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