View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_15 (Length: 412)
Name: NF5629_low_15
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 38598044 - 38598455
Alignment:
| Q |
1 |
aagagatcagtgttcatcctagatatacataattcagcatactctccctcatatttatatggtatgaagcagtatcagcaccttcctcttgacatactcg |
100 |
Q |
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| T |
38598044 |
aagagatcagtgttcatcctagatatacataattcagcatactctccctcatatttatatggtatgaagcagtatcagcacctttctcttgacatactcg |
38598143 |
T |
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| Q |
101 |
cgtagtattcaattggctgggctcccacataatctagaacttctattccacagtgtatgtctcatgattcttcttttccaattggccgggcagttatatc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38598144 |
cgtagtattcaattggctgggctcctacataatctagaacttctattccacagtgtatgtctcatgattcttcttttccaattggccgggcagttatatc |
38598243 |
T |
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| Q |
201 |
tgcttctgtttggagtttttgtttcatcagttgttacatgattaagcctgtttttctctcttggtatttagctactttattttgcgtcatgaaattattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38598244 |
tgcttctgtttggagtttttgtttcatcagttgttagatgattaagcctgtttctctctcttggtatttagctactttattttgcgtcatgaaattattt |
38598343 |
T |
|
| Q |
301 |
gagcctacacatcatgagtgcttgcttgcttagaattgcccaactgtgtttgactgcctcaaattagccagcacttaagattgcttctaatggacctccg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38598344 |
gagcctacacatcatgagtgcttgcttgcttagaattgcccaactgtgtttgactgcctcaaattagtcagcacttaagattgcttctaatggacctccg |
38598443 |
T |
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| Q |
401 |
atttttcttcac |
412 |
Q |
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|||||||||||| |
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| T |
38598444 |
atttttcttcac |
38598455 |
T |
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