View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_18 (Length: 392)
Name: NF5629_low_18
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 36996639 - 36996271
Alignment:
| Q |
17 |
aatactcgcatttttatgtgagaaaaatatctacaattttttagggaagaaaaatatctacaattaaaatacaataacttcaattttacat---tatgtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36996639 |
aatactcgcatttttatgtgagaaaaatatctacaattttttagggaagaaaaatatctacaattaaaatacaataacttcaattttacatatctatgtt |
36996540 |
T |
|
| Q |
114 |
aaattttcaccccctatatagcattatttcttggttctgtctctgaatgggacaatggttacaagcaaggttgttctcgaatcagattcttcaatatatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36996539 |
aaattttcaccccctatatagcattatttcttggttctgtctctgaatgggacaatggttacaagcaaggttgttctcgaatcagattcttcaatatatg |
36996440 |
T |
|
| Q |
214 |
cacgcagttcttatcaagaattggtgtccgtcgacgcagccatgtgctttcatagaatcactcatcaatcgttttacaatgaaggagtaacaagtatcaa |
313 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36996439 |
catgcagttcttatcaagaattagtgtccgtcgacgcagccatgtgctttcatagaatcactcatcaatcgttttacaatgaaggagtaacaagtatcaa |
36996340 |
T |
|
| Q |
314 |
aaactaatttaaagcaggcaaactatatacattattcttaggcatcctatgtcgggttgtttcattcat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36996339 |
aaactaatttaaagcaggcaaactatatacattattcttaggcatcctatgtcgggttgtttcattcat |
36996271 |
T |
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