View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_2 (Length: 765)
Name: NF5629_low_2
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 177 - 760
Target Start/End: Complemental strand, 32396897 - 32396313
Alignment:
| Q |
177 |
aagttaggtataatatatctggatatataacttcaataagttagtata-atcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgt |
275 |
Q |
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| T |
32396897 |
aagttaggtataatatatctggatacataacttcaataagttagtatatatcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgt |
32396798 |
T |
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| Q |
276 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttct |
375 |
Q |
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| T |
32396797 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttct |
32396698 |
T |
|
| Q |
376 |
tgagttagaatcaattcaagaggtagaatcaattatacacctccgaaaaatttgcctcgtgcgtaagtgaaaccgaatatacacatgataatgtctatag |
475 |
Q |
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| T |
32396697 |
tgagttagaatcaattcacgaggtagaatcaattatacacctccgaaaaatttgcctcgtgcgaaagtgaaaccaaatatacacataataatgtctatag |
32396598 |
T |
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| Q |
476 |
ccaaaccattgatcttatatgttttaatagttttgccaataatttataggtggggtaaaaaagcaagtaaatttttcaaggcagttgtaccatttctaat |
575 |
Q |
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| T |
32396597 |
ccaaaccattgatcttatatgttttaatagttttgccaataattaataggtggggtaaaaaagcaagtaaatttttcaaggcagttgtaccatttctaat |
32396498 |
T |
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| Q |
576 |
caaacttaggcttgaaggtggccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaattttgccatacaaca |
675 |
Q |
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| T |
32396497 |
caaacttaggcttgaaggtggccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaattttgccatacaaca |
32396398 |
T |
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| Q |
676 |
atcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctatttttccccctttgcttct |
760 |
Q |
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| T |
32396397 |
atcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctattttcccctctttgtttct |
32396313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 32397053 - 32396973
Alignment:
| Q |
21 |
gctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttcatcctgataag |
101 |
Q |
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| T |
32397053 |
gctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttcatcctgataag |
32396973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 28537421 - 28537352
Alignment:
| Q |
32 |
tgctaaggttcttgatgaagctggtgttattcttctcttcagggataaggtctatcttcatcctgataag |
101 |
Q |
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| T |
28537421 |
tgctaaggttcttgatgatgctggggttgttctactatttagggataaggtttatctgcatcctgataag |
28537352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 37335029 - 37335090
Alignment:
| Q |
296 |
attcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaag |
357 |
Q |
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| T |
37335029 |
attcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaag |
37335090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 18597150 - 18597019
Alignment:
| Q |
276 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttct |
375 |
Q |
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| T |
18597150 |
agtggtttatatttggataagttcgagtaaaagtgaatttaacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttc- |
18597052 |
T |
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| Q |
376 |
tgagttagaatcaattcaagaggtagaatcaatt |
409 |
Q |
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| T |
18597051 |
-aagttagaatcaattctggaggtaaaatcaatt |
18597019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 392
Target Start/End: Complemental strand, 44439340 - 44439250
Alignment:
| Q |
300 |
atgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttcttgagttagaatcaattc |
392 |
Q |
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| T |
44439340 |
atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttc--aagttagaatcaattc |
44439250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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