View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_21 (Length: 373)
Name: NF5629_low_21
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 4244144 - 4243799
Alignment:
| Q |
14 |
ttctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaat |
113 |
Q |
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| T |
4244144 |
ttctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaat |
4244045 |
T |
|
| Q |
114 |
tgatttggttcgtagtgggcgccaacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccagccgat |
213 |
Q |
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| T |
4244044 |
tgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccagccgat |
4243945 |
T |
|
| Q |
214 |
ggattgttcgtagatggacattcgttgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagattaatcaaaactttcatccttttttgc |
313 |
Q |
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| T |
4243944 |
ggattgttcgtagatggacattcgttgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagattaatcaaaactttcatccttttttgc |
4243845 |
T |
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| Q |
314 |
tttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttac |
359 |
Q |
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| T |
4243844 |
tttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttac |
4243799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 6187198 - 6186855
Alignment:
| Q |
16 |
ctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaaaacaaacaatttgataaattgtctcaagtgagcaatgatattcaaattg |
115 |
Q |
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| T |
6187198 |
ctagctgttttcatcgttatttcgatgtcatcaataagcaacttcaaacaaaacaaacaatttgataaattgtctcaagttagcaatgacattcaaattg |
6187099 |
T |
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| Q |
116 |
atttggttcgtagtgggcgccaacaaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccagccgatgg |
215 |
Q |
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|||||||||| ||||| || | | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6187098 |
atttggttcgaagtggtcgtcggctaaaggtatctatatttgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccggctgatgg |
6186999 |
T |
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| Q |
216 |
attgttcgtagatggacattcgttgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctt |
315 |
Q |
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| T |
6186998 |
attgttcgtagatggacattcgttgagagttgatgaatcgagcatgaccggtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctt |
6186899 |
T |
|
| Q |
316 |
tccggaacaaaagttgtcgatggatatgcaaaaatgctcgttac |
359 |
Q |
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| T |
6186898 |
tccgggacaaaagttgtcgatggatatgcaaaaatgcttgttac |
6186855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 312
Target Start/End: Complemental strand, 6170129 - 6169956
Alignment:
| Q |
139 |
caaaaggtatcaatattcgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccagccgatggattgttcgtagatggacattcgt |
238 |
Q |
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|||||| |||| || || || |||||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||| | |||||| |||| | |
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| T |
6170129 |
caaaagatatcgatctttgagattgttgttggtgatgttgtttttttgaatattggtgatcaagtattgataaatggattattcatcgatggaaattcct |
6170030 |
T |
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| Q |
239 |
tgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagattaatcaaaactttcatccttttttg |
312 |
Q |
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| T |
6170029 |
tgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagagattagtagaaaccctcatccttttttg |
6169956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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