View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_low_27 (Length: 356)

Name: NF5629_low_27
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_low_27
NF5629_low_27
[»] chr5 (14 HSPs)
chr5 (75-251)||(244426-244598)
chr5 (75-250)||(29950111-29950282)
chr5 (75-250)||(29951749-29951920)
chr5 (75-251)||(4568245-4568417)
chr5 (256-340)||(29949708-29949792)
chr5 (256-340)||(29951346-29951430)
chr5 (256-340)||(244917-245001)
chr5 (8-59)||(21352724-21352775)
chr5 (8-58)||(21352602-21352652)
chr5 (121-251)||(34597760-34597885)
chr5 (12-59)||(245075-245122)
chr5 (12-59)||(29949587-29949634)
chr5 (12-59)||(29951225-29951272)
chr5 (12-59)||(38936717-38936764)
[»] chr7 (22 HSPs)
chr7 (75-250)||(9595423-9595594)
chr7 (75-250)||(9646386-9646557)
chr7 (75-246)||(32706333-32706500)
chr7 (75-222)||(5247404-5247549)
chr7 (256-340)||(9595915-9595999)
chr7 (256-340)||(9646878-9646962)
chr7 (256-340)||(9647414-9647498)
chr7 (256-340)||(23446783-23446867)
chr7 (256-340)||(7842797-7842881)
chr7 (256-340)||(40998698-40998782)
chr7 (256-340)||(41000557-41000641)
chr7 (8-59)||(23446658-23446709)
chr7 (128-239)||(14575555-14575663)
chr7 (128-239)||(14578831-14578939)
chr7 (12-59)||(7842676-7842723)
chr7 (12-59)||(9647572-9647619)
chr7 (12-59)||(40998856-40998903)
chr7 (12-59)||(41000716-41000763)
chr7 (12-55)||(24790122-24790165)
chr7 (12-55)||(24790156-24790199)
chr7 (15-59)||(9596073-9596117)
chr7 (15-59)||(9647036-9647080)
[»] chr8 (13 HSPs)
chr8 (75-251)||(20730868-20731040)
chr8 (256-340)||(8366228-8366312)
chr8 (256-340)||(17278154-17278238)
chr8 (127-187)||(23015809-23015870)
chr8 (12-55)||(17277677-17277720)
chr8 (12-59)||(17278311-17278358)
chr8 (256-324)||(17277530-17277598)
chr8 (12-59)||(8366107-8366154)
chr8 (12-59)||(17277409-17277456)
chr8 (12-58)||(6778292-6778338)
chr8 (12-58)||(17857163-17857209)
chr8 (12-58)||(23016398-23016444)
chr8 (151-187)||(6777693-6777729)
[»] chr4 (29 HSPs)
chr4 (75-251)||(15019268-15019440)
chr4 (75-251)||(17266683-17266856)
chr4 (78-251)||(39488135-39488304)
chr4 (75-251)||(15017628-15017800)
chr4 (75-246)||(9167179-9167346)
chr4 (75-250)||(34098714-34098884)
chr4 (75-243)||(17780707-17780878)
chr4 (79-231)||(23090824-23090973)
chr4 (256-340)||(9399098-9399182)
chr4 (256-340)||(13518439-13518523)
chr4 (256-340)||(15018119-15018203)
chr4 (256-340)||(15019759-15019843)
chr4 (256-340)||(39488629-39488713)
chr4 (256-321)||(13517922-13517987)
chr4 (8-59)||(39488787-39488838)
chr4 (12-59)||(9399256-9399303)
chr4 (12-59)||(13518597-13518644)
chr4 (12-59)||(15018277-15018324)
chr4 (12-59)||(15019917-15019964)
chr4 (127-186)||(11099045-11099105)
chr4 (105-167)||(19460135-19460197)
chr4 (12-58)||(21377201-21377247)
chr4 (121-234)||(19180437-19180550)
chr4 (14-45)||(22473681-22473712)
chr4 (12-58)||(18281383-18281429)
chr4 (12-58)||(42873066-42873112)
chr4 (12-56)||(11098499-11098543)
chr4 (15-59)||(13518061-13518105)
chr4 (12-56)||(46690508-46690552)
[»] chr2 (20 HSPs)
chr2 (75-251)||(15409793-15409965)
chr2 (75-251)||(6050208-6050380)
chr2 (75-251)||(33809368-33809538)
chr2 (256-340)||(18535781-18535865)
chr2 (256-340)||(22300375-22300459)
chr2 (256-340)||(24806763-24806847)
chr2 (259-340)||(24808619-24808700)
chr2 (8-59)||(31974130-31974181)
chr2 (124-187)||(44792884-44792948)
chr2 (8-59)||(18535939-18535990)
chr2 (127-187)||(24808197-24808258)
chr2 (127-187)||(18535362-18535423)
chr2 (12-59)||(22299690-22299737)
chr2 (12-59)||(22300533-22300580)
chr2 (129-187)||(24806340-24806399)
chr2 (12-59)||(24806921-24806969)
chr2 (12-59)||(24808777-24808825)
chr2 (12-58)||(44792615-44792661)
chr2 (12-58)||(44793446-44793492)
chr2 (12-59)||(24806089-24806137)
[»] chr1 (24 HSPs)
chr1 (75-251)||(22062130-22062302)
chr1 (75-251)||(6473768-6473940)
chr1 (75-251)||(20127065-20127237)
chr1 (78-251)||(24157042-24157210)
chr1 (75-251)||(20190417-20190588)
chr1 (256-340)||(48462926-48463010)
chr1 (256-340)||(24157532-24157616)
chr1 (256-340)||(20190909-20190993)
chr1 (256-340)||(36233429-36233513)
chr1 (8-59)||(24157690-24157741)
chr1 (256-330)||(36233845-36233919)
chr1 (256-340)||(48463836-48463918)
chr1 (256-340)||(20189276-20189360)
chr1 (8-59)||(20191067-20191118)
chr1 (124-187)||(40554445-40554509)
chr1 (12-59)||(36233308-36233355)
chr1 (12-59)||(36233993-36234040)
chr1 (8-58)||(20189435-20189485)
chr1 (129-187)||(48463137-48463195)
chr1 (129-184)||(48463719-48463774)
chr1 (12-58)||(31390149-31390195)
chr1 (12-58)||(40553903-40553949)
chr1 (12-58)||(40554692-40554738)
chr1 (15-59)||(48463991-48464035)
[»] chr6 (11 HSPs)
chr6 (75-250)||(30518271-30518442)
chr6 (75-251)||(18781747-18781919)
chr6 (75-251)||(20414891-20415063)
chr6 (75-251)||(20419624-20419796)
chr6 (75-251)||(6230621-6230793)
chr6 (75-251)||(18553333-18553503)
chr6 (103-251)||(20417538-20417682)
chr6 (75-166)||(20417683-20417774)
chr6 (127-187)||(2147847-2147908)
chr6 (12-51)||(12037064-12037103)
chr6 (12-45)||(12037016-12037049)
[»] scaffold0010 (1 HSPs)
scaffold0010 (75-248)||(136751-136920)
[»] scaffold0083 (1 HSPs)
scaffold0083 (75-251)||(33212-33383)
[»] chr3 (26 HSPs)
chr3 (75-251)||(5553466-5553638)
chr3 (75-251)||(17236829-17236995)
chr3 (106-225)||(22271157-22271276)
chr3 (256-340)||(23460323-23460407)
chr3 (256-340)||(5554270-5554354)
chr3 (256-340)||(16346755-16346839)
chr3 (256-340)||(25531757-25531841)
chr3 (256-340)||(5553319-5553403)
chr3 (256-340)||(47418455-47418539)
chr3 (256-340)||(16022631-16022715)
chr3 (8-59)||(47418613-47418664)
chr3 (9-59)||(16346631-16346681)
chr3 (127-187)||(16347198-16347259)
chr3 (127-187)||(47418036-47418097)
chr3 (128-239)||(13956962-13957070)
chr3 (128-239)||(15381933-15382041)
chr3 (128-239)||(15387669-15387777)
chr3 (12-59)||(5554428-5554475)
chr3 (12-59)||(16022789-16022836)
chr3 (12-59)||(5553198-5553245)
chr3 (149-239)||(13962695-13962782)
chr3 (12-59)||(23460202-23460249)
chr3 (255-340)||(47566597-47566680)
chr3 (255-330)||(32570599-32570674)
chr3 (75-108)||(16345391-16345424)
chr3 (208-251)||(23433143-23433184)
[»] scaffold0075 (1 HSPs)
scaffold0075 (75-251)||(25746-25918)
[»] scaffold0585 (1 HSPs)
scaffold0585 (86-251)||(858-1019)
[»] scaffold0076 (1 HSPs)
scaffold0076 (75-251)||(54765-54937)
[»] scaffold0017 (1 HSPs)
scaffold0017 (75-251)||(4579-4751)
[»] scaffold0146 (6 HSPs)
scaffold0146 (75-251)||(6610-6781)
scaffold0146 (75-251)||(9505-9676)
scaffold0146 (75-251)||(17172-17343)
scaffold0146 (8-59)||(31587-31638)
scaffold0146 (256-306)||(31712-31762)
scaffold0146 (127-187)||(7732-7793)
[»] scaffold0096 (2 HSPs)
scaffold0096 (117-251)||(22600-22730)
scaffold0096 (12-59)||(22399-22446)
[»] scaffold0026 (2 HSPs)
scaffold0026 (256-340)||(86700-86784)
scaffold0026 (12-59)||(86583-86630)
[»] scaffold0025 (3 HSPs)
scaffold0025 (256-340)||(54978-55062)
scaffold0025 (127-187)||(55425-55486)
scaffold0025 (12-59)||(54856-54904)
[»] scaffold0269 (3 HSPs)
scaffold0269 (75-144)||(1491-1560)
scaffold0269 (268-340)||(1882-1954)
scaffold0269 (12-59)||(2004-2051)
[»] scaffold0013 (3 HSPs)
scaffold0013 (256-340)||(241167-241251)
scaffold0013 (127-187)||(241614-241675)
scaffold0013 (12-59)||(241046-241093)
[»] scaffold0018 (3 HSPs)
scaffold0018 (259-340)||(563-644)
scaffold0018 (127-187)||(141-202)
scaffold0018 (12-59)||(721-769)
[»] scaffold0254 (1 HSPs)
scaffold0254 (127-187)||(24311-24372)
[»] scaffold0180 (1 HSPs)
scaffold0180 (127-187)||(10850-10911)
[»] scaffold0139 (2 HSPs)
scaffold0139 (127-187)||(6465-6526)
scaffold0139 (12-58)||(4225-4271)
[»] scaffold0002 (2 HSPs)
scaffold0002 (127-187)||(374790-374851)
scaffold0002 (12-58)||(375346-375392)
[»] scaffold0094 (1 HSPs)
scaffold0094 (12-51)||(13543-13582)
[»] scaffold0021 (2 HSPs)
scaffold0021 (12-59)||(17657-17704)
scaffold0021 (12-59)||(27188-27235)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-58)||(5220-5266)
[»] scaffold0359 (1 HSPs)
scaffold0359 (12-56)||(8902-8946)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 244598 - 244426
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  244598 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 244499  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  244498 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 244426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 29950111 - 29950282
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29950111 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 29950210  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  29950211 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccatt 29950282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 29951749 - 29951920
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29951749 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 29951848  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    ||||| |||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  29951849 tgtggtgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccatt 29951920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 4568245 - 4568417
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||    
T  4568245 gttgaattttatagaattttatacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgatcttatcaaaaaatcatatttct 4568344  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  |||| |||||||||||  ||||||||||||||||||||||||||    
T  4568345 tgtggcgatcctcgcatcca-tagacttatca--cttttttggattagaa--agtgtggcgtccctgtctatccattc 4568417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 29949708 - 29949792
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  29949708 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaatattta 29949792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 29951346 - 29951430
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  29951346 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaatattta 29951430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 245001 - 244917
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  245001 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaatattta 244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 21352775 - 21352724
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21352775 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 21352724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21352602 - 21352652
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21352602 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttgg 21352652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 34597760 - 34597885
Alignment:
Q  121 ctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggatta 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  | ||| |||| | ||||||  ||||||| | ||||||  ||||||||| ||||    
T  34597760 ctcttgtggttctggattgaaccatcctt-atcttatcaagaaat--ccttttttgtagagatcct--catccaccaacttatcgttctttcttgaatta 34597854  T
Q  221 gaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||| | || | |||||||||||||    
T  34597855 gaaagagtgtagtgttcttgtctatccattc 34597885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 245122 - 245075
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  245122 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 245075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29949587 - 29949634
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29949587 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 29949634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29951225 - 29951272
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  29951225 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 29951272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 38936717 - 38936764
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| || |||||||||||| ||| |||||||||    
T  38936717 aagaataataaagtcattgtgaaataaaagaaccaaatcaattttggg 38936764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 9595594 - 9595423
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9595594 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 9595495  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  9595494 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccatt 9595423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 9646557 - 9646386
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9646557 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 9646458  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  9646457 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccatt 9646386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 32706333 - 32706500
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706333 gttgaattttatagaattttacacatatgtgtattaagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 32706432  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatc 246  Q
    |||||| ||||||||||| | ||| |||||||  ||||||||||||||||  ||||||| |||||| ||||||    
T  32706433 tgtggcaatcctcgcatcta-tagacttatca--ctttcttggattagaa--agtgtggtgtccctctctatc 32706500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 5247549 - 5247404
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||| ||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  5247549 gttgaattgtgtagaattttacacgtatgagtgttgagagctttgtctcttatggttctggattgaatcatccttgatcttatcaagaaatcatattttt 5247450  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattaga 222  Q
    ||||| ||||||  ||| ||  ||||||||||||||||||||||||||    
T  5247449 tgtggagatcct--cattcatcagcttatcaatctttcttggattaga 5247404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 9595999 - 9595915
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  9595999 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatattta 9595915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 9646962 - 9646878
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  9646962 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatattta 9646878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 9647498 - 9647414
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||| | || ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  9647498 ttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatattta 9647414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 23446783 - 23446867
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  23446783 ttgaggtgatctttaactcgttggaaagcttaccaaattctctacatttcatctgtttgagtcaagagcaaattcggaatattta 23446867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 7842797 - 7842881
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || |||||||| || | ||||||  ||||||||||| ||||||||||||||||||    
T  7842797 ttgaggtgatctttaactcgttggaaagcttacgaaattctatacaattcatccgtttgactcaagtgcaaattcggaatattta 7842881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 40998782 - 40998698
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||| ||||||||||||||  ||||||||    
T  40998782 ttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcttaatattta 40998698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 41000641 - 41000557
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||| |||||||||||||||| |  ||||||||||| ||||||||| ||||| ||||||||||||||  ||||||||    
T  41000641 ttgaggtgatctctaactcgttggaaagcttgcgaaattctctacatttcatctgtttgattcaagagcaaattcttaatattta 41000557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 23446658 - 23446709
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  23446658 tgaaaagaataataaagtcattgtggaataaaagaaccaaattaattttggg 23446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 14575663 - 14575555
Alignment:
Q  128 ggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagag 227  Q
    |||||||||||| ||||    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||    
T  14575663 ggttctggattggaccaaaactgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagag 14575567  T
Q  228 tgtggcgtccct 239  Q
    ||||||| ||||    
T  14575566 tgtggcgcccct 14575555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 14578939 - 14578831
Alignment:
Q  128 ggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagag 227  Q
    |||||||||||| ||||    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||    
T  14578939 ggttctggattggaccaaaactgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagag 14578843  T
Q  228 tgtggcgtccct 239  Q
    ||||||| ||||    
T  14578842 tgtggcgcccct 14578831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 7842676 - 7842723
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  7842676 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 7842723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9647619 - 9647572
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9647619 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 9647572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 40998903 - 40998856
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  40998903 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 40998856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 41000763 - 41000716
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  41000763 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 41000716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 24790122 - 24790165
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattt 55  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  24790122 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 24790199 - 24790156
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattt 55  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  24790199 aagaataataaagtcattgtggaataaaagaaccaaattaattt 24790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 9596117 - 9596073
Alignment:
Q  15 aataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  9596117 aataataaagttattgtggaataaaagaaccaaattaactttggg 9596073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 9647080 - 9647036
Alignment:
Q  15 aataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  9647080 aataataaagttattgtggaataaaagaaccaaattaactttggg 9647036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 20730868 - 20731040
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  20730868 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 20730967  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  20730968 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 20731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 8366228 - 8366312
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||||||||||||| |||||| || | ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  8366228 ttgaggtgatctttaactcgtttgaaagcttacggaattctctacattttatctatttgactcaagagcaaattcggaatattta 8366312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 17278238 - 17278154
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||| ||||||||| || |||||| |||| ||||| ||| |||||||||| |||||||||||||||||||    
T  17278238 ttgaggtgatctttaactcattggaaagcttacgaaattttctacatttcgtctgtttgactcaaaagcaaattcggaatattta 17278154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 23015870 - 23015809
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  23015870 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 23015809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 17277677 - 17277720
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattt 55  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  17277677 aagaataataaagtcattatggaataaaagaaccaaattaattt 17277720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 17278358 - 17278311
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17278358 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 17278311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 17277530 - 17277598
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagc 324  Q
    ||||||||||||||||||| ||||||||| || | ||||||||| ||||| ||| ||||||||| ||||    
T  17277530 ttgaggtgatctttaactcattggaaagcttacggaattctctacatttcgtctgtttgactcaggagc 17277598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 8366107 - 8366154
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  8366107 aagaataataaattcattgtggaataaaagaaccaaattaattttggg 8366154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 17277409 - 17277456
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||||    
T  17277409 aagaataataaagtcattgtggaataaaagaatcaaattaattttggg 17277456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 6778338 - 6778292
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  6778338 aagaataataaagttattgtggaataaaagaaccgaattaattttgg 6778292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 17857163 - 17857209
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  17857163 aagaataataaattcattatggaataaaagaatcaaattatttttgg 17857209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 23016444 - 23016398
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    ||||||| |||||||||||||||||||||||| | ||||| ||||||    
T  23016444 aagaatattaaagtcattatggaataaaagaatcaaattatttttgg 23016398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 6777729 - 6777693
Alignment:
Q  151 atcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  6777729 atcttatcaagaaaccacgtttcttgtggcgatcctc 6777693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 15019440 - 15019268
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15019440 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 15019341  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  15019340 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 15019268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 17266856 - 17266683
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcaca-tttc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  17266856 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcagattttc 17266757  T
Q  174 ttgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||| |||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  17266756 ttgtggtgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 17266683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 39488304 - 39488135
Alignment:
Q  78 gaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgt 177  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  39488304 gaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaatcatccttgatcttatcaagaaatcatatttcttgt 39488205  T
Q  178 ggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  39488204 ggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 39488135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 15017800 - 15017628
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15017800 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 15017701  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    | |||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  15017700 tatggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 15017628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 9167179 - 9167346
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  9167179 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 9167278  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatc 246  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||    
T  9167279 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatc 9167346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 34098714 - 34098884
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  34098714 gttgaattttatagaattttacacttatgtgtattgagaactttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatta-ttttct 34098812  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    |||||||||||||||||| | ||| |||||||  |||| |||||||||||  |||||||||||||||||||||||||    
T  34098813 tgtggcgatcctcgcatcta-tagacttatca--ctttattggattagaa--agtgtggcgtccctgtctatccatt 34098884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 17780707 - 17780878
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattga----accatccttgatcttatcaagaaatcacat 170  Q
    |||||||||| || |||||||||||||||||||||||||||| | |||||||||||| ||||||||    || ||| ||||| |||||||||||||||||    
T  17780707 gttgaattttatacaattttacacatatgtgtattgagagctct-tctcttgtggttatggattgatcgaactatctttgattttatcaagaaatcacat 17780805  T
Q  171 ttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtct 243  Q
    |||||||||||||||| ||||  ||  ||||||||||||||||||||||||||| |||| |||| ||||||||    
T  17780806 ttcttgtggcgatccttgcatgtaccggcttatcaatctttcttggattagaaaaagtgcggcgcccctgtct 17780878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 23090973 - 23090824
Alignment:
Q  79 aattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtg 178  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||||||| ||||  | |||||||||    
T  23090973 aattttatagaattttatacatatgtgtattgatagctttgtctcttgcggttttagattgaatcatccttgatcttatcaataaat-tcttttcttgtg 23090875  T
Q  179 gcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtg 231  Q
    |||||| |   |||||   |||||||| |||||||||||||||||||||||||    
T  23090874 gcgatctt--tatccatcggcttatcattctttcttggattagaaagagtgtg 23090824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 9399182 - 9399098
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  9399182 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcgtctgtttgactcaagagcaaattcggaatattta 9399098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 13518523 - 13518439
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||| | || ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  13518523 ttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatattta 13518439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 15018203 - 15018119
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  15018203 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaatattta 15018119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 15019843 - 15019759
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  15019843 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaatattta 15019759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 39488713 - 39488629
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||| | | ||||||| ||||||||||||||||| || |||||||||    
T  39488713 ttgaggtgatctttaactcgttggaaagcttacgaaattctccacaattcatctgtttgactcaagagcaaactcagaatattta 39488629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 13517987 - 13517922
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaag 321  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||    
T  13517987 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 13517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 39488838 - 39488787
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39488838 tgaaaagaataataaattcattatggaataaaagaacctaattaattttggg 39488787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9399303 - 9399256
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9399303 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 9399256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13518644 - 13518597
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  13518644 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 13518597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 15018324 - 15018277
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  15018324 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 15018277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 15019964 - 15019917
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  15019964 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 15019917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 11099045 - 11099105
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcct 186  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||| |||||    
T  11099045 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcaatcct 11099105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 19460135 - 19460197
Alignment:
Q  105 gtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatca 167  Q
    ||||| |||| |||||| ||||||||| || ||||||| || |||||||||||||||||||||    
T  19460135 gtattaagagttttgtcccttgtggttatgaattgaactattcttgatcttatcaagaaatca 19460197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 21377201 - 21377247
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  21377201 aagaataataaagtcaatatggaataaaagaaccaaattatttttgg 21377247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 19180550 - 19180437
Alignment:
Q  121 ctcttgtggttctggattgaacc-atccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggatt 219  Q
    ||||| ||||||||||||| ||| |   ||||||||||||||||| ||| |||||||||||||||||  |  ||  | |||||||| || ||||||||||    
T  19180550 ctcttttggttctggattggaccaaattttgatcttatcaagaaaccacgtttcttgtggcgatcct--ctacctttggcttatcattccttcttggatt 19180453  T
Q  220 agaa-agagtgtggcg 234  Q
    |||| |||||||||||    
T  19180452 agaagagagtgtggcg 19180437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 22473681 - 22473712
Alignment:
Q  14 gaataataaagtcattatggaataaaagaacc 45  Q
    ||||||||||||||||||||||||||||||||    
T  22473681 gaataataaagtcattatggaataaaagaacc 22473712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 18281429 - 18281383
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  18281429 aagaataataaagtcattatcgaataaaagaatcaaattatttttgg 18281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 42873112 - 42873066
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  42873112 aagaataataaattcattatggaataaaagaatcaaattatttttgg 42873066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11098499 - 11098543
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaatttt 56  Q
    |||||||||||| ||||||||||||||||||| | |||| |||||    
T  11098499 aagaataataaattcattatggaataaaagaatcaaatttatttt 11098543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 13518105 - 13518061
Alignment:
Q  15 aataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  13518105 aataataaagttattgtggaataaaagaaccaaattaactttggg 13518061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46690508 - 46690552
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaatttt 56  Q
    |||||||||||||||| | ||||||||||||||  ||||||||||    
T  46690508 aagaataataaagtcagtgtggaataaaagaactaaattaatttt 46690552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 15409793 - 15409965
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15409793 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 15409892  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  15409893 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 15409965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 6050380 - 6050208
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6050380 gttgaatattatagaattttacacatatgtgtattaagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 6050281  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  6050280 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 6050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 33809368 - 33809538
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||||||||||| |||||  |||||||||| |||||      ||||  | |||||    
T  33809368 gttgaattttatagaattttacacatatgtgtgttgagagtcttgtctcttgtggttttggatcaaaccatccttaatctt------aaatttcttttct 33809461  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||||||||||||||   |||||||| ||||||||||||| |||||||||||||| || |||||||| ||||    
T  33809462 tgtggcgatcctcgcatccatcggcttatcattctttcttggattggaaagagtgtggcgcccttgtctatcgattc 33809538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 18535865 - 18535781
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  18535865 ttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcggaatattta 18535781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 22300459 - 22300375
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||||||||| |||||||||| || | ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22300459 ttgaggtgatctttaacttgttggaaagcttacggaattctctacatttcatctgtttgactcaagagcaaattcggaatattta 22300375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 24806847 - 24806763
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  24806847 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaatattta 24806763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 24808700 - 24808619
Alignment:
Q  259 aggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||||||| ||||||||| || ||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  24808700 aggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaatattta 24808619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31974181 - 31974130
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31974181 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 31974130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 44792948 - 44792884
Alignment:
Q  124 ttgtggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  44792948 ttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 44792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 18535990 - 18535939
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  18535990 tgaaaagaataataaagtcattgtggaataaaagaaccaaattaattttggg 18535939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 24808258 - 24808197
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  24808258 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 24808197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 18535423 - 18535362
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    |||||||||||||||||||   ||||||||||||||||| ||| ||||||||||||||||||    
T  18535423 tggttctggattgaaccatgtattgatcttatcaagaaaccacgtttcttgtggcgatcctc 18535362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 22299690 - 22299737
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  22299690 aagaataataaattcattgtggaataaaagaaccaaattaattttggg 22299737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 22300580 - 22300533
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  22300580 aagaataataaattcattgtggaataaaagaaccaaattaattttggg 22300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 24806399 - 24806340
Alignment:
Q  129 gttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||| | ||||||||||||||||| ||| |||||||||| |||||||    
T  24806399 gttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggtgatcctc 24806340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 24806969 - 24806921
Alignment:
Q  12 aagaataataaa-gtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  24806969 aagaataataaaagtcattgtggaataaaagaaccaaattaattttggg 24806921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 24808825 - 24808777
Alignment:
Q  12 aagaataata-aagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  24808825 aagaataatagaagtcattgtggaataaaagaaccaaattaattttggg 24808777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 44792615 - 44792661
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  44792615 aagaataataaattcattatggaataaaagaatcaaattatttttgg 44792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 44793492 - 44793446
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  44793492 aagaataataaattcattatggaataaaagaatcaaattatttttgg 44793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 24806089 - 24806137
Alignment:
Q  12 aagaataataaa-gtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| |||||| ||||||||||||||| | |||||||||||    
T  24806089 aagaataataaaagtcattgtggaataaaagaaccaatttaattttggg 24806137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 22062302 - 22062130
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  22062302 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 22062203  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  22062202 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 22062130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 6473768 - 6473940
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6473768 gttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaatcatccttgatcttatcaagaaatcacatttct 6473867  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||| ||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  6473868 tgtgacgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 6473940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 20127065 - 20127237
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20127065 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 20127164  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| ||||||   ||||||||||||||||  ||||||||||||||||||||||||||    
T  20127165 tgtggcgatcctcgcatcca-tagacttatc--gctttcttggattagaa--agtgtggcgtccctgtctatccattc 20127237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 24157210 - 24157042
Alignment:
Q  78 gaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgt 177  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||    
T  24157210 gaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttatggatcgaaccatccttgatcttatcaagaaatca-ttttcttgt 24157112  T
Q  178 ggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    || |||||||||||||| |  |||||||  |||||||| |||||||  |||| |||||||||||||||||||||    
T  24157111 ggtgatcctcgcatccattgacttatca--ctttcttgaattagaa--agtgcggcgtccctgtctatccattc 24157042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 20190588 - 20190417
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |   ||||    
T  20190588 gttgaactttgtagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagacatta-tgttct 20190490  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||| |||||||| |||| ||| |||||||   |||||||||||||||  |||||||||||| |||||||||||||    
T  20190489 tgtggcaatcctcgcttcca-tagacttatca--gtttcttggattagaa--agtgtggcgtccttgtctatccattc 20190417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 48462926 - 48463010
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48462926 ttgatgtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagagcaaattcggaatattta 48463010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 24157616 - 24157532
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  24157616 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaactcaagagaaaattcggaatattta 24157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 20190993 - 20190909
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||| ||||||||| ||  ||||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  20190993 ttgaggtgatctttaactctttggaaagcttactaaattatctacatttcatctgtttgactcaagagcaaattcggaatattta 20190909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 36233429 - 36233513
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||| |||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  36233429 ttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaatattta 36233513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 24157741 - 24157690
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24157741 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 24157690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 36233919 - 36233845
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattc 330  Q
    |||||| |||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||    
T  36233919 ttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 36233845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 48463918 - 48463836
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||  |||||||||||||| ||||    
T  48463918 ttgaggtgatctttaactcgttggaaagcttacgaaattctttacatttcatctgtttgactca--agcaaattcggaattttta 48463836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 20189360 - 20189276
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||| |||| |||||||||  ||  |||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  20189360 ttgaggtgatcttcaacttgttggaaagtttacaaaattctctacatttcatctgtttgactcaagagcaaagtcggaatattta 20189276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 20191118 - 20191067
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20191118 tgaaaagaataataaagtcattatagaataaaagaacctaattaattttggg 20191067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 40554445 - 40554509
Alignment:
Q  124 ttgtggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  40554445 ttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 40554509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 36233308 - 36233355
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  36233308 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 36233355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 36234040 - 36233993
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  36234040 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 36233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 20189485 - 20189435
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  20189485 tgaaaaaaataataaagtcattgtggaataaaagaaccaaattaattttgg 20189435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 48463137 - 48463195
Alignment:
Q  129 gttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    |||||||||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||    
T  48463137 gttctggattgaaccattattgatcttatcaagaaaccacgtttcttgtgacgatcctc 48463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 48463774 - 48463719
Alignment:
Q  129 gttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatc 184  Q
    ||||| |||||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  48463774 gttctcgattgaaccatcattgatcttatcaagaaaccacgtttcttgtgtcgatc 48463719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31390149 - 31390195
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  31390149 aagaataataaattcattatggaataaaagaatcaaattatttttgg 31390195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 40553903 - 40553949
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  40553903 aagaataataaattcattatggaataaaagaatcaaattatttttgg 40553949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 40554738 - 40554692
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  40554738 aagaataataaattcattatggaataaaagaatcaaattatttttgg 40554692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 48464035 - 48463991
Alignment:
Q  15 aataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||| ||| ||||||||||||||| || ||||||||||    
T  48464035 aataataaagttattgtggaataaaagaaccaaaataattttggg 48463991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 30518442 - 30518271
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30518442 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 30518343  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccatt 250  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  30518342 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccatt 30518271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 18781747 - 18781919
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  18781747 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 18781846  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  18781847 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 18781919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 20415063 - 20414891
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  20415063 gttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 20414964  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||| ||||||||  ||||||||||||||||||||||||||    
T  20414963 tgtggcgatcctcgcatcca-tagacttatca--ctttcttagattagaa--agtgtggcgtccctgtctatccattc 20414891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 20419796 - 20419624
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  20419796 gttgaattttatagaattttacacatatgtgtattgagagtcttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 20419697  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  20419696 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 20419624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 6230793 - 6230621
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6230793 gttgaattttgtagaattttacacatatgtgtattgagagttttgactcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 6230694  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    | |||||||| |  ||||||   |||||||| ||||| |||||||  |||||||||||||  |||||||||||||||    
T  6230693 tatggcgatctt--catccatcggcttatcattcttttttggattgaaaagagtgtggcg--cctgtctatccattc 6230621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 18553333 - 18553503
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  18553333 gttgaattttatagaattttacacat--gtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 18553430  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||| ||||    
T  18553431 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatcaattc 18553503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 103 - 251
Target Start/End: Complemental strand, 20417682 - 20417538
Alignment:
Q  103 gtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactag-ctt 201  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||    
T  20417682 gtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatcca-tagactt 20417584  T
Q  202 atcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||  ||||||||||||||||  ||||||||||||||||||||| ||||    
T  20417583 atca--ctttcttggattagaa--agtgtggcgtccctgtctatcaattc 20417538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 20417774 - 20417683
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatc 166  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20417774 gttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatc 20417683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 2147908 - 2147847
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  2147908 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 2147847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 12037103 - 12037064
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaatta 51  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  12037103 aagaataataaagtcattgtggaataaaagaaccaaatta 12037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 12037016 - 12037049
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacc 45  Q
    |||||||||||||||||| |||||||||||||||    
T  12037016 aagaataataaagtcattgtggaataaaagaacc 12037049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 136751 - 136920
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  136751 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattaaaccatccttgatcttatcaagaaatcatatttct 136850  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatcca 248  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||||||||||||    
T  136851 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatcca 136920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 33212 - 33383
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  33212 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatta-ttttct 33310  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| ||||||||  |||||||||||||||  ||||||||||||||||||||| ||||    
T  33311 tgtggcgatcctcgcatcca-tagacttatcaa--tttcttggattagaa--agtgtggcgtccctgtctatcaattc 33383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 5553466 - 5553638
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  5553466 gttgaattttatagaattttacacatatgtgtattgagagctttatctcttgtggttctggattgaaccatcattgatcttatcaagaaatcatatttct 5553565  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||||||||||| || ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  5553566 tgtggcgatcctcgcataca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 5553638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 17236995 - 17236829
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||      ||||||||| |||||||||||||    
T  17236995 gttgaattttgtagaattttacacttatgtgtatcgagagttttgtctcttgtggttctggtttgaaccat------tcttatcaaaaaatcacatttct 17236902  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||| |  | |||||||  ||||||||||||  ||| |||||||| ||||||||| |||||||    
T  17236901 tgtggcgatcctcgcatcgataaacttatca--ctttcttggatt--aaaaagtgtggcatccctgtctgtccattc 17236829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 22271157 - 22271276
Alignment:
Q  106 tattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatc--ctcgcatccactag-ctta 202  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  22271157 tattgagagttttgtctcttgtggttctggattgaaccatcattgatcttatcaagaaatcacatttcttgtggcgatcatctcgcatcca-tagactta 22271255  T
Q  203 tcaatctttcttggattagaaag 225  Q
    |||  |||||| |||||||||||    
T  22271256 tca--ctttctgggattagaaag 22271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 23460323 - 23460407
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  23460323 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaatattta 23460407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 5554354 - 5554270
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||| ||| || ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  5554354 ttgaggtgatctttaactcgttggatagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaatattta 5554270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 16346755 - 16346839
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||| |||||||||||||| |||||||||    
T  16346755 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgagtcaagagcaaattcagaatattta 16346839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 25531757 - 25531841
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  25531757 ttgaggtgatctttaactcgttggaaagcttatggaattctctacatttcatctgtttgacttaagagcaaattcagaatattta 25531841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 5553319 - 5553403
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| | ||||||||||||||| ||||||||    
T  5553319 ttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaattcaagagcaaattcgaaatattta 5553403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 47418539 - 47418455
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||| |||||||||||||| |||||||||    
T  47418539 ttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcagaatattta 47418455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 16022715 - 16022631
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||| |||||||||||||||||||| || ||| ||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  16022715 ttgaggtggtctttaactcgttggaaagcttacgaagttctctacatttcgtctgtttgactcaagatcaaattcggaatattta 16022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 47418664 - 47418613
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  47418664 tgaaaagaataataaagtcattgtggaataaaagaaccaaattaattttggg 47418613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 16346631 - 16346681
Alignment:
Q  9 gaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  16346631 gaaaagaataataaagtcattgtggaataaaagaaccaaattaattttggg 16346681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 16347198 - 16347259
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  16347198 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 16347259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 47418097 - 47418036
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  47418097 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 47418036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 13957070 - 13956962
Alignment:
Q  128 ggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagag 227  Q
    |||||||||||| ||||    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||    
T  13957070 ggttctggattggaccaaaactgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagag 13956974  T
Q  228 tgtggcgtccct 239  Q
    ||||||| ||||    
T  13956973 tgtggcgcccct 13956962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 15381933 - 15382041
Alignment:
Q  128 ggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagag 227  Q
    |||||||||||| ||||    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||    
T  15381933 ggttctggattggaccaaaactgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagag 15382029  T
Q  228 tgtggcgtccct 239  Q
    ||||||| ||||    
T  15382030 tgtggcgcccct 15382041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 15387669 - 15387777
Alignment:
Q  128 ggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagag 227  Q
    |||||||||||| ||||    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||    
T  15387669 ggttctggattggaccaaaactgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagag 15387765  T
Q  228 tgtggcgtccct 239  Q
    ||||||| ||||    
T  15387766 tgtggcgcccct 15387777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 5554475 - 5554428
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  5554475 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 5554428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 16022836 - 16022789
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  16022836 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 16022789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 5553198 - 5553245
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| || |||||||||||| |||||||||||||    
T  5553198 aagaataataaagtcattgtgaaataaaagaaccaaattaattttggg 5553245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 13962782 - 13962695
Alignment:
Q  149 tgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccct 239  Q
    |||||||||||||||||| | |||||||||| |||||||  |||||   |||||||| ||| |||||||||||||||||| ||||| ||||    
T  13962782 tgatcttatcaagaaatc-cttttcttgtggtgatcctc--atccataggcttatcattctctcttggattagaaagagtatggcgcccct 13962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 23460202 - 23460249
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||    
T  23460202 aagaataataaagtcattgtagaataaaagaaccaaattaattttggg 23460249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 47566597 - 47566680
Alignment:
Q  255 attgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || ||||| ||| ||||||||  ||||||||||  ||||||||    
T  47566597 attgaggtgatctttaattcgttggaaagcttacaaaattctttacatttcgtctgtttgactc--gagcaaattcaaaatattta 47566680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 32570599 - 32570674
Alignment:
Q  255 attgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattc 330  Q
    ||||||||||||||||| |||||||||||| ||  ||||| |||| ||||  | | |||||||| |||||||||||    
T  32570599 attgaggtgatctttaattcgttggaaagcttacaaaattatctacattttgtatgtttgactcgagagcaaattc 32570674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 16345424 - 16345391
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtat 108  Q
    |||||||||| |||||||||||||||||||||||    
T  16345424 gttgaattttatagaattttacacatatgtgtat 16345391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 23433143 - 23433184
Alignment:
Q  208 ctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  23433143 ctttcttggattagaaag--tgtggcgtccatgtctatccattc 23433184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 25918 - 25746
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  25918 gttgaattttatagaattttacacatatgtgtagtgagagctttgtctcttgtagttctggattgaaccaaccttgatcttatcaagaaatcatatttct 25819  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||||||||||||||    |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  25818 tgtggcgatcctcgcatccatatacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 25746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 1019 - 858
Alignment:
Q  86 tagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcc 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1019 tagaattttacacatatgtgtattgagaactttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcc 920  T
Q  186 tcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    || |||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  919 tctcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 54765 - 54937
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  54765 gttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 54864  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||| |||||||||| ||| |||||||  ||||||||||||||||  |||||||||||||| | |||||||||    
T  54865 tgtggcgatactcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctatatatccattc 54937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 4751 - 4579
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  4751 gttgaatattatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 4652  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    || ||||||||| ||||||| ||| |||||||  ||||||||||||||||  |||||||| |||||||||||||||||    
T  4651 tgcggcgatccttgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcatccctgtctatccattc 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 6610 - 6781
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||    |||||    
T  6610 gttgaattttatagaattttacacttatgtgtattgagagctttgtctcttgtggttttggattgaaccattcttgatcttatcaag-aattttttttct 6708  T
Q  175 tgtggcgatcctcgcatccactag-cttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||||||||||||||||||||||||||    
T  6709 tgtggcgatcctcgcatcca-tagacttatca--ctttcttggattagaa--agtgtggcgtccctgtctatccattc 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 9505 - 9676
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||  | |||||    
T  9505 gttgaatttgatagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgttcttatcaag-aatttcttttct 9603  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||| |||||||||||||||   |||||||  ||||||||||||||||  ||||||| ||||||||||||||||||    
T  9604 tgtggggatcctcgcatccaccgacttatca--ctttcttggattagaa--agtgtggtgtccctgtctatccattc 9676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 17172 - 17343
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttct 174  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||  | |||||    
T  17172 gttgaatttgatagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgttcttatcaag-aatttcttttct 17270  T
Q  175 tgtggcgatcctcgcatccactagcttatcaatctttcttggattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||| |||||||||||||||   |||||||  ||||||||||||||||  ||||||| ||||||||||||||||||    
T  17271 tgtggggatcctcgcatccaccgacttatca--ctttcttggattagaa--agtgtggtgtccctgtctatccattc 17343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 31587 - 31638
Alignment:
Q  8 tgaaaagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  31587 tgaaaagaataataaagtcattgtggaataaaagaaccaaattaattttggg 31638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 31712 - 31762
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttca 306  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  31712 ttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttca 31762  T

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Target: scaffold0146; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 7732 - 7793
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||| |||||   ||||||||||||||||| ||| |||||||||| |||||||    
T  7732 tggttctggattggaccatggattgatcttatcaagaaaccacgtttcttgtggagatcctc 7793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 22730 - 22600
Alignment:
Q  117 ttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatttcttgtggcgatcctcgcatccactag-cttatcaatctttcttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||  ||||||||    
T  22730 ttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatcca-tagacttatca--ctttcttg 22634  T
Q  216 gattagaaagagtgtggcgtccctgtctatccattc 251  Q
    ||||||||  ||||||||||||||||||||||||||    
T  22633 gattagaa--agtgtggcgtccctgtctatccattc 22600  T

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Target: scaffold0096; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 22399 - 22446
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22399 aagaataataaagtcattgtggaataaaagaaccaaattaattttggg 22446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 86700 - 86784
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  86700 ttgaggtgatctttaactcgtttgaaagcttacgaaattctctaaatttcatctgtttgactcaagagcaaattcggaatattta 86784  T

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Target: scaffold0026; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 86583 - 86630
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  86583 aagaataataaagtcattgtggaataaaggaaccaaattaattttggg 86630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 54978 - 55062
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  54978 ttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcggaatattta 55062  T

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Target: scaffold0025; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 55425 - 55486
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||| ||||||||||||||||||    
T  55425 tggttctggattgaaccatgcattgatctcatcaagaaaccacgtttcttgtggcgatcctc 55486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 54856 - 54904
Alignment:
Q  12 aagaataataaa-gtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  54856 aagaataataaaagtcattgtggaataaaagaaccaaattaattttggg 54904  T

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Target: scaffold0269 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 1560 - 1491
Alignment:
Q  75 gttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaacca 144  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  1560 gttgaattttatagaattttacacttatgtgtattgagagctttgtctcttatggttctggattgaacca 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 1954 - 1882
Alignment:
Q  268 ttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  1954 ttaactcgttggaaagcttatggaattctctacatttcatctgtctgactcaagagcaaattcggaatattta 1882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 2051 - 2004
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  2051 aagaataataatgtcattgtggaataaaagaaccaaattaattttggg 2004  T

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Target: scaffold0013 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 241167 - 241251
Alignment:
Q  256 ttgaggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    ||||||||||||||||||||||||||||| || ||| ||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  241167 ttgaggtgatctttaactcgttggaaagcttacgaagttctctacatttcgtctttttgactcaggagcaaattcggaatattta 241251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 241614 - 241675
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| |||||||||| |||||||    
T  241614 tggttctggattgaaccatgcgttgatcttatcaagaaaccacgtttcttgtggtgatcctc 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 241046 - 241093
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||||    
T  241046 aagaataataaagtcattgcagaataaaagaaccaaattaattttggg 241093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 644 - 563
Alignment:
Q  259 aggtgatctttaactcgttggaaagcatatgaaattctctatatttcatctatttgactcaagagcaaattcggaatattta 340  Q
    |||||||||||||||| ||||||||| || ||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  644 aggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaatattta 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 202 - 141
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  202 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 769 - 721
Alignment:
Q  12 aagaataata-aagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  769 aagaataatagaagtcattgtggaataaaagaaccaaattaattttggg 721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 24372 - 24311
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  24372 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 24311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 10911 - 10850
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  10911 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 10850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 6465 - 6526
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  6465 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 4225 - 4271
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  4225 aagaataataaagtcattatggaataaaagaatcaaattatttttgg 4271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 374851 - 374790
Alignment:
Q  127 tggttctggattgaaccatcc-ttgatcttatcaagaaatcacatttcttgtggcgatcctc 187  Q
    ||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  374851 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 374790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 375392 - 375346
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  375392 aagaataataaattcattatggaataaaagaatcaaattatttttgg 375346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 13582 - 13543
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaatta 51  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  13582 aagaataataaagtcattatggaataaaagaaccaaatta 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 17657 - 17704
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||| | | ||||||||||||| |||||||||||||    
T  17657 aagaataataaagtcagtgttgaataaaagaaccaaattaattttggg 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 27188 - 27235
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttggg 59  Q
    |||||||||||||||| | | ||||||||||||| |||||||||||||    
T  27188 aagaataataaagtcagtgttgaataaaagaaccaaattaattttggg 27235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5220 - 5266
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaattttgg 58  Q
    |||||||||||| ||||||||||||||||||| | ||||| ||||||    
T  5220 aagaataataaattcattatggaataaaagaatcaaattatttttgg 5266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8946 - 8902
Alignment:
Q  12 aagaataataaagtcattatggaataaaagaacctaattaatttt 56  Q
    |||||||||||||||||| ||||||| ||||||| | ||||||||    
T  8946 aagaataataaagtcattgtggaatataagaaccaagttaatttt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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