View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5629_low_28 (Length: 349)
Name: NF5629_low_28
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 45668388 - 45668069
Alignment:
| Q |
16 |
caaaaactaaggactaccaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45668388 |
caaaaactaaggactaccaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactggcaatc |
45668289 |
T |
|
| Q |
116 |
aaattctgagggaagaaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagatatctattttctgttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45668288 |
aaattctgagggaagaaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagagatctattttctgttct |
45668189 |
T |
|
| Q |
216 |
ttcgaatgaaactaagact-cctaactagttgacaaaattgaaatcaattatcaatgattatgattaccgatgtaggatcaaggtgattagtacaaatct |
314 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45668188 |
tttgaatgaaactaagactccctaactagttgacaaaattgaaatcaattatcaatgattatgattaccgatgtaggatcaaggtgattagtacaaatct |
45668089 |
T |
|
| Q |
315 |
gcggtagattcttctgtgct |
334 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45668088 |
gcggtagattcttctgtgct |
45668069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 37971857 - 37971949
Alignment:
| Q |
49 |
gatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactgaaa |
141 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| |||| || || || ||||| |||||| ||||||| |||| ||| ||||| |||||||| |
|
|
| T |
37971857 |
gatatttacctgccacgagtcataggcagtattaagaatgaatagcggggttctgacactggcaatcaagttctcaggaaagaagcactgaaa |
37971949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 51342974 - 51343058
Alignment:
| Q |
54 |
ttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactg |
138 |
Q |
| |
|
|||||||||| | ||||||||| | |||||||||||| ||||| || || ||||| |||| |||| ||||||||| || ||||| |
|
|
| T |
51342974 |
ttacctgccaagtatcataagctgcattgagaagaaatagtggcgtccttacacttgcaattaaatgctgagggaaaaagcactg |
51343058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University