View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_3 (Length: 714)
Name: NF5629_low_3
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 4665136 - 4664667
Alignment:
| Q |
1 |
aaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaaggacgttatcaacactatatttcctaatgtgatgagaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4665136 |
aaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatctgaaggacgttatcaacactatatttcctaatgtgatgagaaga |
4665037 |
T |
|
| Q |
101 |
agcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataattaatatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4665036 |
agcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataattaatatgca |
4664937 |
T |
|
| Q |
201 |
cgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatac--------atgattttcctttttcttgacaaaacttgta |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
4664936 |
cgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatacatactggtatgattttcctttttcttgacataacttgta |
4664837 |
T |
|
| Q |
293 |
tggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgtaaatggaaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664836 |
tggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgtaaatggaaga |
4664737 |
T |
|
| Q |
393 |
atcatgagaaattaaataaatttagttggttcatttattaaattttgaaatggtgaaaccaacatggtct |
462 |
Q |
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| T |
4664736 |
atcgtgagaaattaaataaatttagttggttcatttattaaattttgaaatggtgaaaccaacatggtct |
4664667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 460 - 639
Target Start/End: Complemental strand, 4664596 - 4664416
Alignment:
| Q |
460 |
tctcatgtgaaacacattaaatgtattgatgtcgatttaaggattagtcttatagttaatctaaagggtctaagccgtgtgatattttaagatgtctaat |
559 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4664596 |
tctcatgtgaaacatattaaatgtattgatgtcgatttaaagattagtcttatagttaatttaaagggtctaagccgtgtgatattttaagatgtttaat |
4664497 |
T |
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| Q |
560 |
ggaagtcaaagactatgacacacgcattatatttttcaaat-aacatttgtcatatttatgttagagaaattacactcaaa |
639 |
Q |
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| T |
4664496 |
tgaagtcaaagactatgacacacgcattatattttttaaataaacatttgtcatatttatgttagagattttgcactcaaa |
4664416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 633 - 696
Target Start/End: Complemental strand, 4664398 - 4664335
Alignment:
| Q |
633 |
actcaaactcatgttgtgttatccacgacaataaggatgtgttgcatgataacaatcagtttat |
696 |
Q |
| |
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| T |
4664398 |
actcaaactcatgttgtgttatccacaacaataaggatgtgttgcatgataacaatcagtttat |
4664335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43267526 - 43267588
Alignment:
| Q |
1 |
aaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaagga |
63 |
Q |
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||||| ||| ||||||||||||||||||||||| ||||| || ||||||| |||| ||||||| |
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| T |
43267526 |
aaaagctttaggaactgaaggtctagaaaatattaaagtagtaggttgcaagaatctgaagga |
43267588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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