View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_31 (Length: 336)
Name: NF5629_low_31
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 3165716 - 3166017
Alignment:
| Q |
18 |
gaacatgcagaaaaaacaaaactagaacaaatggagacatgttgtagaatttaagaataagtatgtgtacttattgtccactcacaaatactaagctcga |
117 |
Q |
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| T |
3165716 |
gaacatgcaggaaaaacaaaactagaacaaatggagacatgttgtagaatttaagaataagtatgtatacttattgtccactcacaaatactaagcttga |
3165815 |
T |
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| Q |
118 |
agagaaagttaaccatgaaactaacccaattgaatctccagagcgttcaatagctttctttagctcttctactcttcttttcctaagctcctcatacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3165816 |
agagaaagttaaccatgaaactaacccaattgaatctccagagcgttcaatagctttctttagctcttctactcttcttttcctaagctcctcatacaaa |
3165915 |
T |
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| Q |
218 |
aaatccctggcattgtaattttaccatcatgcaatgagacataacatacaacttgtatgaaattttcaaagggtattccactaaaagaatctccgtgagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3165916 |
aaatccctggcattgtaattttaccatcatgcaatgagacataacatacaacttgtatgaaattttcaaagggtattccactaaaagaatctccgtaagc |
3166015 |
T |
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| Q |
318 |
at |
319 |
Q |
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|| |
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| T |
3166016 |
at |
3166017 |
T |
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