View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_38 (Length: 289)
Name: NF5629_low_38
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 18915227 - 18915359
Alignment:
| Q |
1 |
gaatgaatccatcagaagcaacagagaaagcaacggaatcatcctcagagaaacaacaatcaagaagagaagcttctgaattagcttctaatctaaccac |
100 |
Q |
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| T |
18915227 |
gaatgaatccatcagaagcaacagagaaagcaacggaatcatcctcagagaaacaacaatcaagaagagaagcttctgaattagcttctaatctaaccac |
18915326 |
T |
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| Q |
101 |
agaagcgtcgaaatcgtacaaacgaagattctg |
133 |
Q |
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| T |
18915327 |
agaagcgtcgaaatcgtacaaacgaagattctg |
18915359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 18915442 - 18915483
Alignment:
| Q |
227 |
cgaaacttacagtgtcccaagatgaaatgagaaggttgttag |
268 |
Q |
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| T |
18915442 |
cgaaacttacagtgtcccaagatgaaatgagaaggttgttag |
18915483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 11673471 - 11673353
Alignment:
| Q |
15 |
gaagcaacagagaaagcaacggaatcatcctcagagaaacaacaatcaagaagagaagcttctgaattagcttctaatctaaccacagaagcgtcgaaat |
114 |
Q |
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|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||| || |||| |
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| T |
11673471 |
gaagcaacagagaaagaaacagaatcatcctcagagaagcaacaatcaagaagagcagcttctgaattcgcttctaatctatccacagaagcatccaaat |
11673372 |
T |
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| Q |
115 |
cgtacaaacgaagattctg |
133 |
Q |
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| | |||||||||||||| |
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| T |
11673371 |
tgcataaacgaagattctg |
11673353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 11673272 - 11673231
Alignment:
| Q |
227 |
cgaaacttacagtgtcccaagatgaaatgagaaggttgttag |
268 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| |
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| T |
11673272 |
cgaaacttactgaatcccaagatgaaatgagaaggttgttag |
11673231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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