View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_low_4 (Length: 657)

Name: NF5629_low_4
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_low_4
NF5629_low_4
[»] chr4 (8 HSPs)
chr4 (370-582)||(54085019-54085233)
chr4 (189-384)||(54084802-54084997)
chr4 (23-196)||(54084609-54084782)
chr4 (19-196)||(54081202-54081379)
chr4 (352-561)||(54081596-54081802)
chr4 (216-308)||(54081480-54081572)
chr4 (19-55)||(54084581-54084617)
chr4 (189-226)||(54081423-54081460)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 370 - 582
Target Start/End: Original strand, 54085019 - 54085233
Alignment:
Q  370 atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54085019 atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc 54085118  T
Q  470 caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatat--aaaagag 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  54085119 caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatataaaaaagag 54085218  T
Q  568 tattacttaattaag 582  Q
    |||||||||||||||    
T  54085219 tattacttaattaag 54085233  T

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Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 189 - 384
Target Start/End: Original strand, 54084802 - 54084997
Alignment:
Q  189 ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54084802 ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt 54084901  T
Q  289 tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54084902 tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg 54084997  T

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Target: chr4; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 54084609 - 54084782
Alignment:
Q  23 tggctctggagccggagcaggagctggctctggctctggttctagttcttcctcaagttcatcatcatcttcatcttctagttccggttccggttctggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54084609 tggctctggagccggagcaggagctggctctggctctggttctagttcttcctcaagttcatcatcatcttcatcttctagttccggttccggttctggg 54084708  T
Q  123 gcagggtcggaggcaggctcatatgcaggctctcgggctggttcgggatccggtggtagaagtcgcggtggtgg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  54084709 gcagggtcggaggcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgcagtggtgg 54084782  T

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Target: chr4; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 54081202 - 54081379
Alignment:
Q  19 gcagtggctctggagccggagcaggagctggctctggctctggttctagttcttcctcaagttcatcatcatcttcatcttctagttccggttccggttc 118  Q
    |||||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||| || || |||||    
T  54081202 gcagtggctctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctcttcgtcttctagttctgggtctggttc 54081301  T
Q  119 tggggcagggtcggaggcaggctcatatgcaggctctcgggctggttcgggatccggtggtagaagtcgcggtggtgg 196  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54081302 cggggcagggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgcggtggtgg 54081379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 352 - 561
Target Start/End: Original strand, 54081596 - 54081802
Alignment:
Q  352 aaataatgaacatgttagatggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtctttt 448  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||| |    
T  54081596 aaataatgaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttct 54081695  T
Q  449 cctgttatgattccaaatttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctga 548  Q
      ||||||||    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||  |  |||| ||||| |||    
T  54081696 --tgttatga----aaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttga 54081789  T
Q  549 attcagatatata 561  Q
    |||||||||||||    
T  54081790 attcagatatata 54081802  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 54081480 - 54081572
Alignment:
Q  216 ggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaagaaaat 308  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||| | | | ||| |||  ||||| ||||||   ||||||||||||||    
T  54081480 ggttatggtgaaggtgggggtgattaattcaggaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaat 54081572  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 54084581 - 54084617
Alignment:
Q  19 gcagtggctctggagccggagcaggagctggctctgg 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  54084581 gcagtggctctggagccggagcaggagctggctctgg 54084617  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 54081423 - 54081460
Alignment:
Q  189 ggtggtggaggctatgggcagggctctggttatggtga 226  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  54081423 ggtggtggaggctctgggcagggctctggttatggtga 54081460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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