View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_low_42 (Length: 280)

Name: NF5629_low_42
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_low_42
NF5629_low_42
[»] chr8 (25 HSPs)
chr8 (1-280)||(39848403-39848682)
chr8 (1-278)||(38632696-38632971)
chr8 (101-278)||(39848684-39848861)
chr8 (101-278)||(38453613-38453790)
chr8 (101-276)||(38632975-38633149)
chr8 (86-278)||(34916273-34916465)
chr8 (82-276)||(34533706-34533900)
chr8 (83-232)||(38453871-38454020)
chr8 (86-165)||(34916549-34916628)
chr8 (100-265)||(34544774-34544939)
chr8 (82-214)||(34916131-34916263)
chr8 (86-278)||(34916411-34916603)
chr8 (82-165)||(34533844-34533927)
chr8 (102-199)||(34539027-34539124)
chr8 (82-165)||(39848659-39848742)
chr8 (100-165)||(34549182-34549247)
chr8 (82-175)||(34533568-34533661)
chr8 (100-161)||(38632572-38632633)
chr8 (85-165)||(39848281-39848361)
chr8 (1-150)||(38453654-38453800)
chr8 (1-165)||(34533904-34534065)
chr8 (220-280)||(38632830-38632890)
chr8 (218-278)||(34533566-34533626)
chr8 (118-178)||(36951475-36951535)
chr8 (82-154)||(38632682-38632754)
[»] chr4 (2 HSPs)
chr4 (101-278)||(44474550-44474727)
chr4 (67-164)||(44474388-44474485)
[»] chr3 (1 HSPs)
chr3 (101-158)||(7045822-7045879)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 39848682 - 39848403
Alignment:
Q  1 taagtccatttgacatacaaccaacaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtgga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39848682 taagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctctcccatcatccattttccatgttttccaatttccaatgga 39848583  T
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  39848582 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatctccagtatcccaactcataatccct 39848483  T
Q  201 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39848482 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtat 39848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 38632971 - 38632696
Alignment:
Q  1 taagtccatttgacatacaaccaacaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtgga 100  Q
    ||||||||||||||| | ||||| ||||||||||||| |||||  |||| ||||||  | |||||| |||||||||   | ||||||||||||||||| |    
T  38632971 taagtccatttgacaaataaccatcaaaaacatcaccgttagctgaatccaaaatccatctcccataatccattttgtctattttccaatttccagtgta 38632872  T
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    ||||||||||||||| ||||||||||||||| ||||||||  |||||||| |||||||||||||| ||||||||| |||||| |||| |||||||| |||    
T  38632871 gacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcaccagtagcccaactcataattcct 38632772  T
Q  201 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
      ||||||| ||   | |||||||||| |||| || ||||||  | ||| ||||||||||||||||||||||||||||    
T  38632771 tttccatccatt--gtcttttttccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgt 38632696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 278
Target Start/End: Complemental strand, 39848861 - 39848684
Alignment:
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    ||||||||| || ||  |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||  | |||| ||||||||||||    
T  39848861 gacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcaccaacaacccaactcataatccct 39848762  T
Q  201 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
      ||||||| |||  | |||||||||| ||||||| |||||| || |||||||| |||||||||||||||||||||||    
T  39848761 gttccatccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgt 39848684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 38453613 - 38453790
Alignment:
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    |||||||||||||||  ||||| |||||||| ||||||||  |||||||||||||||||||||||  || ||||| ||| || |||| ||||| ||||||    
T  38453613 gacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcccaactcatgatccct 38453712  T
Q  201 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
      ||||||| |||| | || ||||||| ||||| | |||||| || ||||| || ||||||||||||||| |||||||    
T  38453713 gttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgt 38453790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 38633149 - 38632975
Alignment:
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    |||||||||||| ||  |||||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||| |||||| ||||  |||||||||||    
T  38633149 gacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaagtcataatccct 38633050  T
Q  201 aatccatccctttcatgt-tttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccat 276  Q
    | ||||||| |||  ||| ||||||||| |||| |  || ||| || |||||||| || ||||||||||||||||||    
T  38633049 attccatccattt--tgtctttttccaatttcctacgtaaacatccccatttgcaaatttataaactccaaatccat 38632975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 34916273 - 34916465
Alignment:
Q  86 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcc 185  Q
    ||||||||||||| |||| |  ||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| | | | ||| || ||    
T  34916273 ccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcaccattaccc 34916372  T
Q  186 cagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
    ||  |||||||||||  ||||||| ||||   ||||| |||| ||||   ||||||| || |||||||| |||||||||||||| ||||||||    
T  34916373 caattcataatcccttttccatccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgt 34916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 276
Target Start/End: Original strand, 34533706 - 34533900
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagt 181  Q
    ||||||||| |||| ||  ||||||||||||||   ||||| |||||||||||||||||  ||||||||||||||||||||||| ||| ||| | ||| |    
T  34533706 ttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacaccatt 34533805  T
Q  182 atcccagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccat 276  Q
    | |||| ||||||||||||  ||||||  || |   ||||||||||  |||  | | |||| || ||||||||||||||||||||||| ||||||    
T  34533806 agcccatctcataatcccttttccatcatttcccccttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccat 34533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 38453871 - 38454020
Alignment:
Q  83 tttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagta 182  Q
    ||||||||||||||||   |||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||| |||  |    
T  38453871 tttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatca 38453970  T
Q  183 tcccagctcataatccctaatccatccctttcatgttttttccaaattcc 232  Q
      ||| |||||| |||||  |||||| |||| || |||||||||| ||||    
T  38453971 ggccaactcatagtccctcttccatctcttttatcttttttccaatttcc 38454020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 34916549 - 34916628
Alignment:
Q  86 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
    ||||||||||||| |||| |  |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34916549 ccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccat 34916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 265
Target Start/End: Original strand, 34544774 - 34544939
Alignment:
Q  100 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 199  Q
    |||||| ||||||||   |||||||||||||||||||||||  | |||||||||||||||| |||| ||| ||||| ||| || ||||  ||||||||||    
T  34544774 agacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaattcataatccc 34544873  T
Q  200 taatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaac 265  Q
    |  ||||||| ||| ||  ||||||||| | || || |||||| || |||||||| ||||||||||    
T  34544874 tcttccatccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 34916131 - 34916263
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagt 181  Q
    ||||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||||    |||||||||||||| |||||| ||| ||||| ||  |    
T  34916131 ttttccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgtccatttgaccaataaccatcgaaaacatcaccgtt 34916230  T
Q  182 atcccagctcataatccctaatccatccctttc 214  Q
    | ||||  |||||||||||  ||||||||||||    
T  34916231 agcccatttcataatcccttttccatccctttc 34916263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 34916411 - 34916603
Alignment:
Q  86 ccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcc 185  Q
    |||||||||||   ||||||||||||||||  |||||||||||||||||||||||  | |||||||||||||| |||||| ||| |||||  |  || ||    
T  34916411 ccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgaccaataaccatcgaaaacatcatcgttagcc 34916510  T
Q  186 cagctcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
    ||  |||||||||||  ||||| ||||||   ||||| |||| ||||  | |||||     |||||||| |||||||||||||| ||||||||    
T  34916511 catttcataatcccttttccatgcctttcccctttttcccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgt 34916603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 34533844 - 34533927
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
    ||||||||| |||||||  |||||||||||||||  ||||||||||||||||||||| |  ||||| |||||||||||||||||    
T  34533844 ttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccat 34533927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 34539027 - 34539124
Alignment:
Q  102 acatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccc 199  Q
    ||||||||||||||  |||||||||||||| | ||||||  |||||||||||||||||||||||  || ||||||||| || ||||  ||||||||||    
T  34539027 acatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaattcataatccc 34539124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 39848742 - 39848659
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
    |||||||||||||  || ||||||||||||||||  |||||||||||||| ||||||||  |||||||||||||  ||||||||    
T  39848742 ttttccaatttccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccat 39848659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 34549182 - 34549247
Alignment:
Q  100 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
    |||||| ||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  34549182 agacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccat 34549247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 34533568 - 34533661
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatc 175  Q
    ||||||| |||||| |  ||||||||||||| ||  || ||||||||||| ||||||||  |||||||||| |||||||||||| ||| |||||    
T  34533568 ttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatc 34533661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 38632633 - 38632572
Alignment:
Q  100 agacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaa 161  Q
    |||||||||||||||| | |||| |||||||| ||||||||  |||||||||||||||||||    
T  38632633 agacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaa 38632572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 39848361 - 39848281
Alignment:
Q  85 tccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
    |||||||||||||| |||| || ||||||||  ||||| ||||||||||||||| | |||   ||||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaaccat 39848281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 38453654 - 38453800
Alignment:
Q  1 taagtccatttgacatacaaccaacaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtgga 100  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||   |  ||| |||| |   |||||||||    |  |||||||||||| ||| |    
T  38453654 taagtccatttgaccaacaaccatcaaaaacatcaccattagcccaactcatgatccctgttc---catccatttcgtcttctttccaatttccggtgta 38453750  T
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccat 150  Q
    ||||||||||||| |  ||||||||||||||  |||||||  ||||||||    
T  38453751 gacatccccatttacaaatctataaactccaagtccatgtctaagtccat 38453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 34533904 - 34534065
Alignment:
Q  1 taagtccatttgacatacaaccaacaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtgga 100  Q
    |||||| |||||||  ||||||| ||||||||||||||| | ||||||  | |||| || |||||||    |||||||   ||| |||||||||  |  |    
T  34533904 taagtctatttgaccaacaaccatcaaaaacatcaccatcaacccaattcataatccctttcccatct---attttcccattttcccaatttcctctata 34534000  T
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 165  Q
     ||||| |||||| |  |||||||||| |||| |||||||  |||||||||||||||||||||||    
T  34534001 aacatctccatttacatatctataaaccccatgtccatgtttaagtccatttgaccaacaaccat 34534065  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 38632890 - 38632830
Alignment:
Q  220 ttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtat 280  Q
    |||||||| ||||  | |||||| || |||||||| |||||||||||||||||||||||||    
T  38632890 ttttccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtat 38632830  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 34533566 - 34533626
Alignment:
Q  218 ttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
    |||||||||  |||| ||||||||| || |||| |||||| ||||||||||| ||||||||    
T  34533566 ttttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgt 34533626  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 36951535 - 36951475
Alignment:
Q  118 atctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgcc 178  Q
    |||||||||||||| |||| |||  |||||||||| ||||||||||||  || ||||||||    
T  36951535 atctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatcgcc 36951475  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 38632754 - 38632682
Alignment:
Q  82 ttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttga 154  Q
    |||||||||||||  || |||||| ||||| |||  |||||||||||||| ||||||||  || |||||||||    
T  38632754 ttttccaatttcccatgtagacatgcccatctgcatatctataaactccaaatccatgtctaaatccatttga 38632682  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 278
Target Start/End: Complemental strand, 44474727 - 44474550
Alignment:
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccatagaagacatcgccagtatcccagctcataatccct 200  Q
    |||||||||||||||  || || |||||||| ||||||||  ||||||||||||||| ||||| |  || ||||| ||| ||  ||| |||||  |||||    
T  44474727 gacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaactcatggtccct 44474628  T
Q  201 aatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgt 278  Q
      ||||||| |||  |  ||||||||| |||||||||||||| || ||||| || || ||||||||||||||||||||    
T  44474627 cttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaactccaaatccatgt 44474550  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 44474485 - 44474388
Alignment:
Q  67 catccattttccatgttttccaatttccagtggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaacca 164  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||| |   ||| || |||||||| |||||||| |||| |||||||||||| |||||    
T  44474485 catccaatttccctgttttccaatttccagcgtagacatccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaacca 44474388  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 7045822 - 7045879
Alignment:
Q  101 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaa 158  Q
    |||||| ||||||||  || || |||||||||||||||||  ||||||||||||||||    
T  7045822 gacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgaccaa 7045879  T

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