View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_low_45 (Length: 263)

Name: NF5629_low_45
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_low_45
NF5629_low_45
[»] chr5 (3 HSPs)
chr5 (1-154)||(42333517-42333670)
chr5 (172-246)||(42334042-42334118)
chr5 (32-84)||(6023094-6023146)
[»] chr2 (1 HSPs)
chr2 (2-144)||(29060579-29060714)
[»] chr3 (2 HSPs)
chr3 (1-130)||(33335549-33335677)
chr3 (29-81)||(21736866-21736918)
[»] chr7 (1 HSPs)
chr7 (54-106)||(48778372-48778424)
[»] chr6 (1 HSPs)
chr6 (30-122)||(9856908-9857000)
[»] chr4 (1 HSPs)
chr4 (47-79)||(32808048-32808080)
[»] chr1 (1 HSPs)
chr1 (54-106)||(23027988-23028040)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 42333517 - 42333670
Alignment:
Q  1 ctgcaacacaatgatatgttaataaaaaagaacacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  42333517 ctgcaacacaatgatatgttaataaaaaagaacacttcctcacgctctcttcttcccaggcaaacaaccgacgcctccacaaccacgccccaccatcaac 42333616  T
Q  101 ctcccaaccgtgcctccccataagctccactgtacaatctttctttctccatgg 154  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  42333617 ctcccaaccacgcctccccataagctccactgtacaatctttctttctccatgg 42333670  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 42334042 - 42334118
Alignment:
Q  172 ggtagtgacggtaatattagttgaacaagcgactaccattttaaatcaatatta--atatcatacatatgttcttca 246  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||||||    
T  42334042 ggtagtgacggtaatattagttgaacaagctactatcattttaaatcaatattaatatatcatacatatgttcttca 42334118  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 6023094 - 6023146
Alignment:
Q  32 acacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaacc 84  Q
    ||||| |||||| ||||| ||||||||||| ||||||||||| | ||||||||    
T  6023094 acactccctcacactctcctcttcccacgccaacaaccgacgacgccacaacc 6023146  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 29060579 - 29060714
Alignment:
Q  2 tgcaacacaatgatatgttaataaaaaagaacacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacc 101  Q
    ||||||||| || ||| ||||||||| ||||||||  | |||||||| ||||||||||||||||||| |||||||||||      ||||||| |||||||    
T  29060579 tgcaacacagtgttat-ttaataaaagagaacactctcccacgctctattcttcccacgcaaacaactgacgcctccac------gccccaccatcaacc 29060671  T
Q  102 tcccaaccgtgcctccccataagctccactgtacaatctttct 144  Q
     |||||||| ||||||||||||||||||| |||||||||||||    
T  29060672 acccaaccgcgcctccccataagctccacggtacaatctttct 29060714  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 33335549 - 33335677
Alignment:
Q  1 ctgcaacacaatgatatgttaataaaaaagaacacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaac 100  Q
    |||||| |||||| ||||| |||||||  || |||| |||||||| ||| || || ||||||||||  ||||| ||||||| ||||||| ||| ||| |     
T  33335549 ctgcaagacaatgttatgt-aataaaatggagcactccctcacgcgctcctcctctcacgcaaacagacgacgtctccacacccacgcctcaccatctat 33335647  T
Q  101 ctcccaaccgtgcctccccataagctccac 130  Q
    |||||| | | ||||||||||| |||||||    
T  33335648 ctcccacctgagcctccccatacgctccac 33335677  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 21736918 - 21736866
Alignment:
Q  29 agaacacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccaca 81  Q
    |||||||| |||||| ||||| || ||||| ||||||||||| ||||||||||    
T  21736918 agaacactccctcacactctcctcctcccaagcaaacaaccggcgcctccaca 21736866  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 48778372 - 48778424
Alignment:
Q  54 tcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctccca 106  Q
    ||||| |||||||| ||||| |||||||||||||||| || ||| ||||||||    
T  48778372 tcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctccca 48778424  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 9856908 - 9857000
Alignment:
Q  30 gaacacttcctcacgctctcttcttcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctcccaaccgtgcctccccata 122  Q
    ||||||| |||||  |||||||||| ||| ||||||||| | |  ||||||| |||| |||||| || |  |||||||||| |||||||||||    
T  9856908 gaacactccctcagactctcttctttccatgcaaacaactggcatctccacacccacaccccaccattaggctcccaaccgcgcctccccata 9857000  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 32808048 - 32808080
Alignment:
Q  47 ctcttcttcccacgcaaacaaccgacgcctcca 79  Q
    ||||||||||||||||||||||| |||||||||    
T  32808048 ctcttcttcccacgcaaacaacctacgcctcca 32808080  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 23027988 - 23028040
Alignment:
Q  54 tcccacgcaaacaaccgacgcctccacaaccacgccccacaatcaacctccca 106  Q
    ||||| |||||||| ||||| |||||||||||||||| || ||| ||||||||    
T  23027988 tcccaagcaaacaaacgacgtctccacaaccacgcccgaccatccacctccca 23028040  T

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