View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_51 (Length: 249)
Name: NF5629_low_51
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2796554 - 2796324
Alignment:
| Q |
1 |
aatggtgttgaagtgtcaatttcatggtcgggtccattttgaggcttcatatttgaataaaccaaataataacaccaacatttgtttagttaacataata |
100 |
Q |
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| T |
2796554 |
aatggtgttgaagtgtcaatgtcatggtcgggtccattttgaggcttcatatttgaataaaccaaataataacaccaacatttgtttagttaacataata |
2796455 |
T |
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| Q |
101 |
ataaaataataagagtgtgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatcccgcataacaacatccggtgcta |
200 |
Q |
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| T |
2796454 |
ataaaataataagagtgtgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatcccgcataacaacatccggtgcta |
2796355 |
T |
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| Q |
201 |
aaccatacagagaaggattccttgacatacg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2796354 |
aaccatacagagaaggattccttgacatacg |
2796324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 29263949 - 29263891
Alignment:
| Q |
118 |
tgataaattaaagattgagatgcttaccaaatcagccctcctctcctccaatgttatatc |
177 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29263949 |
tgataaattaaa-actgagatgcttaccaaatcagccctcctttcctccaatgttatatc |
29263891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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