View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_56 (Length: 239)
Name: NF5629_low_56
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36706356 - 36706577
Alignment:
| Q |
1 |
cattggttgtgtaaagtgtttttcttccttgtgttgatataatgcaaagcaagactaatgagataagactaattaatactctgctagccattttgacaaa |
100 |
Q |
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| T |
36706356 |
cattggttgtgtaaagtgtttttcttccttgtgttgttgtaatgcaaagcaagactaatgagataagactaattaatactctgctagccattttgacaaa |
36706455 |
T |
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| Q |
101 |
gtggttatgcttagttatgcctctctacataagatgaaactagaggtattttatagatttctatggagggcaaagacaaattgttgaggacaatattgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36706456 |
gtggttatgcttagttatgcctctctacataagatgaaactagaggtattttatagatttctatggagggcaaagactaattgttgaggacaatattgca |
36706555 |
T |
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| Q |
201 |
ttttaatgcatggtggtaataa |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
36706556 |
ttttaatgcatggtcgtaataa |
36706577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36714006 - 36714075
Alignment:
| Q |
1 |
cattggttgtgtaaagtgtttttcttccttgtgttgatataatgcaaagcaagactaatgagataagact |
70 |
Q |
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||||| |||||| |||||||||||||||||| | || | |||| ||| |||||||| |||||||||||| |
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| T |
36714006 |
cattgtttgtgtgaagtgtttttcttccttgggctgctgcaatgtaaaacaagactattgagataagact |
36714075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 30903087 - 30902981
Alignment:
| Q |
1 |
cattggttgtgtaaagtgtttttcttccttgtgttgatataatgcaaagcaagactaatgagataagactaattaatactctgctagccattttgacaaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||| | | ||||||||| |||||||| |||||| ||||||| || || | |||| ||||| ||||||| |
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| T |
30903087 |
cattggttgtgtgaagtgtttttcttccttgtgctactgtaatgcaaaacaagactattgagattagactaactagtattgtgctggccatgttgacaat |
30902988 |
T |
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| Q |
101 |
gtggtta |
107 |
Q |
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||||||| |
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| T |
30902987 |
gtggtta |
30902981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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