View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_64 (Length: 232)
Name: NF5629_low_64
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 31978308 - 31978110
Alignment:
| Q |
17 |
atatgcgatatggattctcaaattttaatttcgtaattttagactcttagtttaaaaaattgataaatatacaattatcattcaatttgatgacgtgaca |
116 |
Q |
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| T |
31978308 |
atatgcgatatggattctcaaattttaatttcgtaattttagact--tagtttaaaaaatggataaatatacaattatcattcaatttgatgacgtgaca |
31978211 |
T |
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| Q |
117 |
ataaattgttcactatcattcatttgcatcatttcaattgatcttcttaatttaatatgctagttttgaagactttcaagaattagaacattcaccttca |
216 |
Q |
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| T |
31978210 |
ataaattgttcactatcattcatttgcatcatttcaattgatcttcttaatttaatatgctagttttgaagactttcaagaattagaacattcaccttca |
31978111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 10565660 - 10565596
Alignment:
| Q |
100 |
aatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttctt |
164 |
Q |
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| T |
10565660 |
aatttgatgatgtggcaataaattgttcactctcaacctcttgtatcatttcaattgatcttctt |
10565596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 21634701 - 21634671
Alignment:
| Q |
96 |
attcaatttgatgacgtgacaataaattgtt |
126 |
Q |
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| T |
21634701 |
attcaatttgatgacgtgacaataaattgtt |
21634671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 33333925 - 33333856
Alignment:
| Q |
95 |
cattcaatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttctt |
164 |
Q |
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| T |
33333925 |
catttaatttgatgacatgacaataaattgtttacttccaacctcttgtatcatttcaattgatcttctt |
33333856 |
T |
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