View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5629_low_8 (Length: 520)

Name: NF5629_low_8
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5629_low_8
NF5629_low_8
[»] chr3 (8 HSPs)
chr3 (18-511)||(53984712-53985205)
chr3 (99-511)||(53971007-53971418)
chr3 (121-161)||(53059802-53059842)
chr3 (122-161)||(37419108-37419147)
chr3 (193-263)||(53059871-53059941)
chr3 (193-263)||(53062884-53062954)
chr3 (193-253)||(37419176-37419236)
chr3 (207-263)||(53071908-53071964)
[»] chr2 (3 HSPs)
chr2 (418-498)||(44253577-44253657)
chr2 (193-263)||(6688087-6688157)
chr2 (467-511)||(6688403-6688447)
[»] chr4 (1 HSPs)
chr4 (194-263)||(34036289-34036358)
[»] chr1 (1 HSPs)
chr1 (197-262)||(16163998-16164063)
[»] chr7 (4 HSPs)
chr7 (222-263)||(19935380-19935421)
chr7 (222-263)||(19966519-19966560)
chr7 (121-161)||(31014384-31014424)
chr7 (194-263)||(31014454-31014529)


Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 53985205 - 53984712
Alignment:
Q  18 atgatattgtatatatgaattaaatcttaaaagttgttaggtgagattgggtttctaatgaaatatctttataatacataaagatatggcacctccatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  53985205 atgatattgtatatatgaattaaatcttaaaagttgttaggtgtgattgggtttctaatgaaatatctttataatacatacagatatggaacctccatct 53985106  T
Q  118 cccagtcccaatgttttacaatctaactcaaatggagctattcttctgcaaccataacgttagaagttgcggcaggaagtggaagtggatgctagacgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53985105 cccagtcccaatgttttacaatctaactcaaatggagctattcttctgcaaccataacgttagaagttggggcaggaagtggaagtggatgctagacgtg 53985006  T
Q  218 cttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaatttaatttggtagatctacctct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53985005 cttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaatttaatttggtaaatctacctct 53984906  T
Q  318 acacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccgacgtgcatttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984905 acacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccgacgtgcatttc 53984806  T
Q  418 atctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaattcgaaagtatta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984805 atctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaattcgaaagtatta 53984712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 99 - 511
Target Start/End: Complemental strand, 53971418 - 53971007
Alignment:
Q  99 agatatggcacctccatctcccagtcccaatgttttacaatctaactcaaatggagctattcttctgcaaccataacgttagaagttgcggcaggaagtg 198  Q
    ||||||||| | || || ||||||||||||  ||| ||||||||||  ||||||||||||||||||||| | || | | || || ||| |||| ||||||    
T  53971418 agatatggcccgtctatttcccagtcccaacttttcacaatctaaccaaaatggagctattcttctgcatctatgagggtaaaatttggggcaagaagtg 53971319  T
Q  199 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaattt 297  Q
    || ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| ||||||||||    
T  53971318 gaggtggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaattt 53971219  T
Q  298 aatttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaa 397  Q
    ||||||||| || ||||||||||   |||||| | | |||||| |||||||  |||| || ||| |||||||||||||||||| ||||||  | ||||||    
T  53971218 aatttggtaaatatacctctacat--gtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaa 53971121  T
Q  398 aatattccgacgtgcatttcatctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaa 497  Q
    ||| ||||||| || |||||||||||| |||||||||||||||||||||  |||||||| | ||||||||||||  |||||||| |||||||||||||||    
T  53971120 aatgttccgacatgtatttcatctcagctaagaacttgtttgtttaaagactgtaaaggaaggaagagtgagcttgaatttgcatagtatgttatgcaaa 53971021  T
Q  498 attcgaaagtatta 511  Q
    |||| |||||||||    
T  53971020 attcaaaagtatta 53971007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 53059802 - 53059842
Alignment:
Q  121 agtcccaatgttttacaatctaactcaaatggagctattct 161  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  53059802 agtccccattttttacaatctaactcaaatggagctattct 53059842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 37419108 - 37419147
Alignment:
Q  122 gtcccaatgttttacaatctaactcaaatggagctattct 161  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  37419108 gtccccattttttacaatctaactcaaatggagctattct 37419147  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 53059871 - 53059941
Alignment:
Q  193 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    |||||||| ||||||||||||  ||||||| || | ||| || ||||||||||||| ||||||| ||||||    
T  53059871 gaagtggatgtggatgctagaaatgcttcagcacactccaaagcttcaacatcttatcattcatgaggttt 53059941  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 53062884 - 53062954
Alignment:
Q  193 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    |||||||| ||||||||||||  ||||||| || ||||| || ||| ||||||||| ||||||| ||||||    
T  53062884 gaagtggacgtggatgctagaaatgcttcagcacagtccaaagctttaacatcttatcattcatgaggttt 53062954  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 37419176 - 37419236
Alignment:
Q  193 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccatt 253  Q
    |||||||| ||||||||||||  |||||||| | ||||| || ||||||||||||| ||||    
T  37419176 gaagtggacgtggatgctagaaatgcttcaaaacagtccaaagcttcaacatcttatcatt 37419236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 53071908 - 53071964
Alignment:
Q  207 tgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    |||||||  |||||||||| ||||| || ||||||||||||| ||||||| ||||||    
T  53071908 tgctagaaatgcttcaacacagtccaaagcttcaacatcttatcattcatgaggttt 53071964  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 44253577 - 44253657
Alignment:
Q  418 atctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaa 498  Q
    ||||||| |||||| ||| ||||||| |||||||| |||||  ||| ||||||| ||||||||||||||||||||||||||    
T  44253577 atctcagctaagaatttgcttgtttacaggttgtagaggcagaaagtgtgagcttcaatttgcagagtatgttatgcaaaa 44253657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 6688087 - 6688157
Alignment:
Q  193 gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    |||||||||||||||| ||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  6688087 gaagtggaagtggatggtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 6688157  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 511
Target Start/End: Original strand, 6688403 - 6688447
Alignment:
Q  467 gagctacaatttgcagagtatgttatgcaaaattcgaaagtatta 511  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||    
T  6688403 gagcttcaatttgcagaatatgttatgcacaattcaaaagtatta 6688447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 34036289 - 34036358
Alignment:
Q  194 aagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    ||||||| ||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  34036289 aagtggaggtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 34036358  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 16164063 - 16163998
Alignment:
Q  197 tggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt 262  Q
    |||| |||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||||||||    
T  16164063 tggaggtggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt 16163998  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
Q  222 aacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19935380 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19935421  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
Q  222 aacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19966519 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 31014384 - 31014424
Alignment:
Q  121 agtcccaatgttttacaatctaactcaaatggagctattct 161  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  31014384 agtccccattttttacaatctaactcaaatggagctattct 31014424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 31014454 - 31014529
Alignment:
Q  194 aagtggaagtggatgctagacgt------gcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 263  Q
    |||||||||||||||||||| ||      ||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  31014454 aagtggaagtggatgctagaagtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt 31014529  T

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