View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5629_low_9 (Length: 470)
Name: NF5629_low_9
Description: NF5629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5629_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 12039555 - 12039115
Alignment:
| Q |
20 |
ttctcgtcgttgacattgctttctttctcctcctcctc---atgatcccatcttagagtcaagaacccaaggtannnnnnnnnnnncaaaaattcatctt |
116 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12039555 |
ttctcgtcgttgacattgctttccttctcctcctcctcctcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctt |
12039456 |
T |
|
| Q |
117 |
tagcaatttccttggattgcaagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcc |
216 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039455 |
tagcaatttccttggattgcgagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcc |
12039356 |
T |
|
| Q |
217 |
tgtaacgtatttcttgctagctacaaagagtgtcaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctct |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039355 |
tgtaacgtatttcttgctagctacaaagagtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctct |
12039256 |
T |
|
| Q |
317 |
aagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039255 |
aagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagag |
12039156 |
T |
|
| Q |
417 |
ttgtgatgcaactaggaagcttctctatgttgttatgagaa |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12039155 |
ttgtgatgcaactaggaagcttctctatgttgttatgagaa |
12039115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 453
Target Start/End: Complemental strand, 11860773 - 11860354
Alignment:
| Q |
31 |
gacattgctttctttctcctcctcctcatgatcccatcttagagtcaagaacccaaggtannnnnnnnnnnncaaaaattcatctttagcaatttccttg |
130 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| |||||||||||| |||||| |
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|
| T |
11860773 |
gacattgctttctt---cctcctcgtcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttccttt |
11860677 |
T |
|
| Q |
131 |
gattgcaagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttct |
230 |
Q |
| |
|
||| | |||||||||||||||| ||||| |||||||||| ||| |||||||| ||||| ||||| |||||| |||||||||||| || || | ||||| |
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|
| T |
11860676 |
gatggagagaacttgacttgttcaagatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttct |
11860577 |
T |
|
| Q |
231 |
tgctagctacaaagagtgtcaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggtt |
330 |
Q |
| |
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|||| ||||| || |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
11860576 |
tgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgatt |
11860477 |
T |
|
| Q |
331 |
gaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaacta |
430 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| |
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| T |
11860476 |
gaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaacta |
11860377 |
T |
|
| Q |
431 |
ggaagcttctctatgttgttatg |
453 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11860376 |
ggaagcttctctatgttgttatg |
11860354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 31 - 453
Target Start/End: Complemental strand, 11828641 - 11828219
Alignment:
| Q |
31 |
gacattgctttctttctcctcctcctcatgatcccatcttagagtcaagaacccaaggtannnnnnnnnnnncaaaaattcatctttagcaatttccttg |
130 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||||||| |||||| |||||| |||||||||||| ||| || |
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|
| T |
11828641 |
gacattgctttcttcgtcctcctcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttctttt |
11828542 |
T |
|
| Q |
131 |
gattgcaagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttct |
230 |
Q |
| |
|
||| | ||||||||| ||||||||||||| |||||||| ||| || ||||| ||||| ||||| |||||| |||||||||||| || || | ||||| |
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|
| T |
11828541 |
gatggagagaacttgatttgttccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttct |
11828442 |
T |
|
| Q |
231 |
tgctagctacaaagagtgtcaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggtt |
330 |
Q |
| |
|
|||| ||||| || |||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11828441 |
tgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggtt |
11828342 |
T |
|
| Q |
331 |
gaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaacta |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
11828341 |
aaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaacta |
11828242 |
T |
|
| Q |
431 |
ggaagcttctctatgttgttatg |
453 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
11828241 |
ggaagcttctccatgttgttatg |
11828219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 106 - 457
Target Start/End: Original strand, 11901853 - 11902207
Alignment:
| Q |
106 |
aaattcatctttagcaatttccttggattgcaagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttct |
205 |
Q |
| |
|
||||||||||| |||| |||||| ||| | ||||| |||||||||| |||||||| ||||||| | |||||||| ||||| ||||| ||||||||| |
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|
| T |
11901853 |
aaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatgcgatatttccaaccggcctctcagattgttaagatccgtgagttct |
11901952 |
T |
|
| Q |
206 |
cttagtcctcctgtaa---cgtatttcttgctagctacaaagagtgtcaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagat |
302 |
Q |
| |
|
||||||||||| || | | | ||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
11901953 |
cttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagat |
11902052 |
T |
|
| Q |
303 |
ccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttg |
402 |
Q |
| |
|
||| ||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||| || | |||||| ||||| |
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|
| T |
11902053 |
ccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttg |
11902152 |
T |
|
| Q |
403 |
caagtggataagagttgtgatgcaactaggaagcttctctatgttgttatgagaa |
457 |
Q |
| |
|
|||||||||||| | |||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
11902153 |
caagtggataagcttagtgatggaactaggtagcttttctatgttgttatgagaa |
11902207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 106 - 450
Target Start/End: Complemental strand, 11732349 - 11732002
Alignment:
| Q |
106 |
aaattcatctttagcaatttccttggattgcaagaacttgacttgttccagatgcgaaatttcca-tgtgacctctcagtttgttgagatcggtgagttc |
204 |
Q |
| |
|
||||||||||||||| ||| |||||| | ||||||||||||| ||||||||| ||||||||| | || ||| | || |||||||||| |||||||| |
|
|
| T |
11732349 |
aaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgcaaaatttccagtttgtcct-tgaggttgttgagatttgtgagttc |
11732251 |
T |
|
| Q |
205 |
tcttagtcctcctgt---aacgtatttcttgctagctacaaagagtgtcaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttaga |
301 |
Q |
| |
|
||||||||||| || | | | ||||||||| || || || |||| |||||||||||| |||||||| |||| |||||| ||||||| ||||||||| |
|
|
| T |
11732250 |
ccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttaga |
11732151 |
T |
|
| Q |
302 |
tccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgttt |
401 |
Q |
| |
|
|||||||| ||||| | || ||||||| |||||| | ||| ||| | || ||||||||||||||||||||| | |||||| | || |||||||| |||| |
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|
| T |
11732150 |
tccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggttt |
11732051 |
T |
|
| Q |
402 |
gcaagtggataagagttgtgatgcaactaggaagcttctctatgttgtt |
450 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11732050 |
gcaaatggataagctttgtgatgcaactaggaagcttctctatgttgtt |
11732002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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