View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630-Insertion-1 (Length: 450)
Name: NF5630-Insertion-1
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 43567250 - 43567368
Alignment:
| Q |
104 |
aggaaataagttagtttgaatgattaaatttgtttttacaatgtatgaatatactatttatagcaaaaactaattgccaaacaacgtataatgctaaaca |
203 |
Q |
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| T |
43567250 |
aggaaataagttagtttgaatgattaaatgtgtttttacaatgtatgaatatactatttatagcaaaaactaattgccaaacaacgtacaatgctaaaca |
43567349 |
T |
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| Q |
204 |
gagagcaacatgttagaaa |
222 |
Q |
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| T |
43567350 |
gagagcaacatgttagaaa |
43567368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 318 - 450
Target Start/End: Original strand, 43567380 - 43567512
Alignment:
| Q |
318 |
gaaagtacgaaatttattaataacaatgtcctagcacatgatgaaaagaggtcgacaagactaaaacaacatacaaatggcgtcatatatatgcggaaca |
417 |
Q |
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| T |
43567380 |
gaaaggacaaaatttattaataacaatgtccttgcacatgatgaaaagaggtcgacaagactaaaacaacatacaaatggcgtcatatatatgcggaaca |
43567479 |
T |
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| Q |
418 |
taaagaaaattcatatttctcatacatcaaacc |
450 |
Q |
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| T |
43567480 |
taaagaaaattcatacttatcgtacatcaaacc |
43567512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 43566724 - 43566828
Alignment:
| Q |
5 |
acactaactgcctcatccattctaccttgagcttgagcacaaagtgcggttactagccttgcaaaactatgtttacaatattgtgatagggacaacacta |
104 |
Q |
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| T |
43566724 |
acactaactgcctcatccattctaccttaagcttgagcacaaagtgcggttactagccttgcaaaactatgtttacagtattgtgatagggacaacacta |
43566823 |
T |
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| Q |
105 |
ggaaa |
109 |
Q |
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| T |
43566824 |
ggaaa |
43566828 |
T |
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