View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630-Insertion-2 (Length: 894)
Name: NF5630-Insertion-2
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Complemental strand, 2033048 - 2032153
Alignment:
| Q |
8 |
atttgcatgtggcaggcagctctaccacaaggaattgttccttttgtttttgctaaagaatataatgtccatccatccatcttaagcactgcgtaagtag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2033048 |
atttgcatgtggcaggcagctctaccacaaggaattgttccttttgtttttgctaaagaatataatgtccatccatccatcttaagcactgcgtaagtag |
2032949 |
T |
|
| Q |
108 |
taatgtcaaagcatctttcataaactttttaatacatatatattttacattgcttaagatttgatgctgttcttgtttcttgttaataggatcttgttag |
207 |
Q |
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| T |
2032948 |
taatttcaaagcatctttcataaactttt-aatacatatat--tttacattgtttaagatttgatgctgttcttgtttcttgttaataggatcttgttag |
2032852 |
T |
|
| Q |
208 |
gaatgctcattgccttgccagtggaattggctttctacttcctcttagcactttgaagggttgtgttaaatatatatgctagaaaca----------gtt |
297 |
Q |
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| T |
2032851 |
gaatgctcattgccttgccggtggaattggctttctacttcctcttagcactttgaagggttgtgttaaatatatatgctagaaacagttataaacagtt |
2032752 |
T |
|
| Q |
298 |
acattacattgcttgaaaatataacactttacacagtgaagtataaatagtattgattaatgataagaaaatatgttatcaccctaaaaaa-ttagtgnn |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2032751 |
acattacattgcttgaaaatataacactttacacagtgaagtataaatagtattgattaatgataagaaaatatgttatcaccctaaaaaatttagtgtt |
2032652 |
T |
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| Q |
397 |
nnnnnagaggcaccctagaaattactgttgctgtgtgtatacaagtaaatgtattattgtcgctttacctcagtttgattattaaaccggtggttaaatt |
496 |
Q |
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| T |
2032651 |
tttttagaggcaccctagaaattagtgttgctgtgtgtatacaagtaaatgtattattgtagctttatctcagtttgattattaaatcggtggttaaatt |
2032552 |
T |
|
| Q |
497 |
agttttagggatcgaacttgggacttctactttaaactccgataannnnnnnnaattaatcaaccgaaatatttccttcgtcagactagggttaagattg |
596 |
Q |
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| T |
2032551 |
tgtttttgagatcgaacctgggacctctattttaaactccgataatgtttcttaattcatcaaccgaattatttccttcgttagactagggttaagattg |
2032452 |
T |
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| Q |
597 |
ataatcataaggtaaaatagcagcacatcaataaaggagtttaataattttgtacc---nnnnnnnnnnnggagtttaatcatttatgaaattaatagag |
693 |
Q |
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| T |
2032451 |
ataatcataaggtaaaatagcagcacatcaataaaggagtttaataattttgtaccaaaaaaaaaaaaaaggagtttaatcatttatgaaattaatagag |
2032352 |
T |
|
| Q |
694 |
attattac-aaaaaagaattaactcacacgataagattactagcacaaatacaatttttattttaatcacaaatatctttttctaagtagaggttataat |
792 |
Q |
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| T |
2032351 |
attattacaaaaaaagaattaacttacacgataagattactagcacaaataaaatttttattttaatcacaaatatctttttctaagtagaggttata-- |
2032254 |
T |
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| Q |
793 |
taattaatgttgaattattaatgtattttcctttaaaagtattagacttttgtataagnnnnnnnnnattaaattttattaattacggatctaaattgtg |
892 |
Q |
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| T |
2032253 |
-aattaatgttgaattattaatgtattttcctttaaaagtattagacttttgtataagtttttttttattaaattttattaattacggatctaaattgtg |
2032155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3215911 - 3215850
Alignment:
| Q |
21 |
aggcagctctaccacaaggaattgttccttttgtttttgctaaagaatataatgtccatcca |
82 |
Q |
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| T |
3215911 |
aggcagctctaccccaaggaattgttccttttgtttttgcaagagagtataatgtccatcca |
3215850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 25043203 - 25043264
Alignment:
| Q |
20 |
caggcagctctaccacaaggaattgttccttttgtttttgctaaagaatataatgtccatcc |
81 |
Q |
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||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| ||||| |
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| T |
25043203 |
caggcagctcttccacaaggaattgtcccatttgtctttgctaaagaatataatgtacatcc |
25043264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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