View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630-Insertion-3 (Length: 692)
Name: NF5630-Insertion-3
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630-Insertion-3 |
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| [»] scaffold0209 (7 HSPs) |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 178; Significance: 1e-95; HSPs: 7)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 65 - 254
Target Start/End: Complemental strand, 17815 - 17626
Alignment:
| Q |
65 |
cctttcacttgttgtaattgttcagattcaacttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgcc |
164 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17815 |
ccttccacttgttgtaattgttcagattcaacttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgcc |
17716 |
T |
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| Q |
165 |
acttcggttttgtacttcagcttatgcacttaggaactcatgtactcttgtatggttacgagatctggcaacttggttcatatttgatct |
254 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17715 |
acttcggttttgtacttgagcttatgcacttaggaactcatgtactcttgtatggttacgagatttggcaacttggttcatatttgatct |
17626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 8424 - 8240
Alignment:
| Q |
70 |
cacttgttgtaattgttcagattcaacttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgccacttc |
169 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8424 |
cacttgttgtaattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttatgatttgccacttc |
8325 |
T |
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| Q |
170 |
ggttttgtacttcagcttatgcacttaggaactcatgtactcttgtatggttacgagatctggcaacttggttcatatttgatct |
254 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8324 |
ggttttgtacttgagcttatgcacttaggaactcatgtactcttgtatggttacgagatttggcaacttggttcatatttgatct |
8240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 21878 - 21694
Alignment:
| Q |
70 |
cacttgttgtaattgttcagattcaacttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgccacttc |
169 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21878 |
cacttgttgtaattgttcagattcatcttggtttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttatgatttgccacttc |
21779 |
T |
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| Q |
170 |
ggttttgtacttcagcttatgcacttaggaactcatgtactcttgtatggttacgagatctggcaacttggttcatatttgatct |
254 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21778 |
ggttttgtacttgagcttatgcacttaggaactcatgtactcttgtatggttacgagatttggcaacttggttcatatttgatct |
21694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 17606 - 17496
Alignment:
| Q |
286 |
tgttaaggagtcaagatcatctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
385 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17606 |
tgttaaggagtcaagatcctctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
17507 |
T |
|
| Q |
386 |
cctttcacttt |
396 |
Q |
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||||||||||| |
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| T |
17506 |
cctttcacttt |
17496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 8222 - 8176
Alignment:
| Q |
286 |
tgttaaggagtcaagatcatctccattttggatctatcctaactcca |
332 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
8222 |
tgttaaggagtcaagatcctttccattttggatctatcctaactcca |
8176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 21676 - 21630
Alignment:
| Q |
286 |
tgttaaggagtcaagatcatctccattttggatctatcctaactcca |
332 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21676 |
tgttaaggagtcaagatcctttccattttggatctatcctaactcca |
21630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 17526 - 17497
Alignment:
| Q |
45 |
aattagcaacttattctaaccctttcactt |
74 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17526 |
aattagcaacttattctaaccctttcactt |
17497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 500 - 692
Target Start/End: Complemental strand, 581195 - 581003
Alignment:
| Q |
500 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
599 |
Q |
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| T |
581195 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcaaaaaaa |
581096 |
T |
|
| Q |
600 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcact |
692 |
Q |
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| T |
581095 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcact |
581003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 500 - 692
Target Start/End: Original strand, 591232 - 591424
Alignment:
| Q |
500 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
591232 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcacaatcaataatgctaacaagaaaagcttcaaaaaaa |
591331 |
T |
|
| Q |
600 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcact |
692 |
Q |
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| T |
591332 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcact |
591424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 581576 - 581423
Alignment:
| Q |
101 |
tttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgccacttcggttttgtacttcagcttatgcacttaggaa |
200 |
Q |
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| T |
581576 |
tttagtactttagttcagagtttgtaccagttttgtactcctggttttgtacttgagatttgccacttcggttttgtacttgagcttatgcacttaggaa |
581477 |
T |
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| Q |
201 |
ctcatgtactcttgtatggttacgagatctggcaacttggttcatatttgatct |
254 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
581476 |
ctcatgtactcttgtatggttacgagatttggcaacttggttcatatttgatct |
581423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 286 - 432
Target Start/End: Complemental strand, 581405 - 581259
Alignment:
| Q |
286 |
tgttaaggagtcaagatcatctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
385 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581405 |
tgttaaggagtcaagatcctctccattttggatctatcctaactccaagttaagagggtgtgatataaacacaacatcccaattagcaacttattctaac |
581306 |
T |
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| Q |
386 |
cctttcactttaacacaagtaatcaccactccaatcatctgattcac |
432 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581305 |
cctttcactttaacacaagtaatcaccactccaatcatctgattcac |
581259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 591127 - 591168
Alignment:
| Q |
391 |
cactttaacacaagtaatcaccactccaatcatctgattcac |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
591127 |
cactttaacacaagtaatcaccactccaatcatctgattcac |
591168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 581325 - 581296
Alignment:
| Q |
45 |
aattagcaacttattctaaccctttcactt |
74 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
581325 |
aattagcaacttattctaaccctttcactt |
581296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 600 - 667
Target Start/End: Complemental strand, 37434696 - 37434629
Alignment:
| Q |
600 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgta |
667 |
Q |
| |
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|||||||||||||||||||| | |||||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
37434696 |
gaaatccaagcagtacactgaaacatatcatagtcctattgtttaacagaaagctccctccgcttgta |
37434629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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