View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630-Insertion-4 (Length: 565)
Name: NF5630-Insertion-4
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 38925940 - 38925386
Alignment:
| Q |
8 |
atatcctcaagcacttaagaaggaactcaattagtgatgcaaacaacaaactgattcaccaaaatcttttgagcaaacatgtttgtagcaatgctctagc |
107 |
Q |
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| T |
38925940 |
atatcctcaagcacttaagaaggaactcaattaatgatgcaaacaacaaactgattcaccaaaatcttttgagcaaacatgtttgtagcaatgctctagc |
38925841 |
T |
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| Q |
108 |
cacatggatggcatgttcctctcaagttctcatgtcttccattacgttgagaatgcccacacaacttcaaaatcacccccatgattgtttgactctaact |
207 |
Q |
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| T |
38925840 |
cacatggatggcatgttcctctcaagttctcatgtcttccattacgttgagaatgcccacacaacttcaaaatcacccccatgattgtttgactctaact |
38925741 |
T |
|
| Q |
208 |
tcaaaatgtttttcagccatcaaaaataattttttacacttgactacttcaaagtttacctttttaacaacaaaatttaagtaaaccttctactaaagcc |
307 |
Q |
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| T |
38925740 |
tcaaaatgtttttcagccatcaaaaataattttttacacttgactacttcaaagtttacctttttaacaacaaaatttaagtaaaccttctactaaagcc |
38925641 |
T |
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| Q |
308 |
ataaccaatcataagaaaatgcatataattctgatgtcactgacaagtgccccccacgcccaatgtccaccagtcttattaagaatgaaattaattccta |
407 |
Q |
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| T |
38925640 |
ataaccaatcataagaaaatgcatataattctgatgtcactgacaagtgccccccacgcccaatgtccaccagtcttgttaagaatgaaattaattccta |
38925541 |
T |
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| Q |
408 |
aatagaaaaagaaaagggggaaatggcttttgggatgtttactgagtgattatgttatgggaggagaccaaactctattttttgaaaggagacatcaaca |
507 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38925540 |
aatagaaaaagaaaagggggaaatggtttttgggatgtttactgagtgattatgttatgggaggagaccaaactctattttttgaaaggagacatcaaca |
38925441 |
T |
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| Q |
508 |
ctctcaaatttcttatatataatttgtctttctaaaattaaatcatctctttcat |
562 |
Q |
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| T |
38925440 |
ctctcaaatttcttatatataatttgtctttctaaaattaaatcatctctttcat |
38925386 |
T |
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