View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630_high_12 (Length: 239)
Name: NF5630_high_12
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 32339878 - 32339672
Alignment:
| Q |
15 |
caaagggaactaaatccctaattatttaccaagctataaatgtctaatggcgccaagttaaattatcaagagaatgaagcatgttctagacatttggtta |
114 |
Q |
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| T |
32339878 |
caaagggaactaaatccctaattatttaccaagctataaatgtctaatggcgccaagttaaattatcaagagaatgaagcatgttctagacatttggtta |
32339779 |
T |
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| Q |
115 |
aatttactttcaccggctacattatgttatggtttatgttctagatagatatttatcgtcacatgaagagttttcatggtcgttttgggggtgatacttg |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32339778 |
aatttactttcaccggctacattatgtgatggtttatgttctagatagatagttatcgtcacataaagagttttcatggtcgttttgggggtgatacttg |
32339679 |
T |
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| Q |
215 |
tcctaaa |
221 |
Q |
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||||||| |
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| T |
32339678 |
tcctaaa |
32339672 |
T |
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