View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630_high_14 (Length: 210)
Name: NF5630_high_14
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 988541 - 988715
Alignment:
| Q |
19 |
agaactaaagctgtttattctcctatcggaaccctaacatcatcaccgtcactttatgcactaccgctgccaactcttccttttgaactcattgaggaaa |
118 |
Q |
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| T |
988541 |
agaactaaagctgtttattctcctatcggaaccctaacatcatcaccgtcactttatgccctgccgctgccaactcttccttttgaactcattgaggaaa |
988640 |
T |
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| Q |
119 |
ttttaagcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctg |
193 |
Q |
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| T |
988641 |
ttttaagcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctg |
988715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 1003659 - 1003791
Alignment:
| Q |
59 |
catcaccgtcactttatgcactaccgctgccaactcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccg |
158 |
Q |
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| T |
1003659 |
catcaccgtcacttccggcgctgccgctgcccactcttccttttgaactcattgaagaaatcctagctaggttaccagtgaagctcctccttcaacttcg |
1003758 |
T |
|
| Q |
159 |
atgctcttgcaagtcatggaattctttaatctc |
191 |
Q |
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| T |
1003759 |
atgcgcttgcaagtcatggaattttctaatctc |
1003791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 1021656 - 1021788
Alignment:
| Q |
59 |
catcaccgtcactttatgcactaccgctgccaactcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccg |
158 |
Q |
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| T |
1021656 |
catcaccgtcacttccggcgctgccgctgcccactcttccttttgaactaattgaagaaatcctagctaggttaccagtgaagctcctccttcaacttcg |
1021755 |
T |
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| Q |
159 |
atgctcttgcaagtcatggaattctttaatctc |
191 |
Q |
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| T |
1021756 |
atgcgcttgcaagtcatggaattttctaatctc |
1021788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 996774 - 996873
Alignment:
| Q |
93 |
tcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctct |
192 |
Q |
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| T |
996774 |
tcttccttttgaactcattgaggaaatcctaagtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctct |
996873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 1013164 - 1013263
Alignment:
| Q |
93 |
tcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctct |
192 |
Q |
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| T |
1013164 |
tcttccttttgaactcattgaggaaatcctaagtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctct |
1013263 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 2441226 - 2441285
Alignment:
| Q |
130 |
ctacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatc |
189 |
Q |
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| T |
2441226 |
ctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatc |
2441285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 1891901 - 1891801
Alignment:
| Q |
91 |
actcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccgatgctct-tgcaagtcatggaattctttaatc |
189 |
Q |
| |
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||||||||||| || |||||| |||||| ||| ||||| || ||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |
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| T |
1891901 |
actcttcctttggatctcatttcagaaattctaactagacttccagtgaagctcctccttcaactccgat-ctgtctgcaagtcatggaattctctaatc |
1891803 |
T |
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| Q |
190 |
tc |
191 |
Q |
| |
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|| |
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| T |
1891802 |
tc |
1891801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 804036 - 803979
Alignment:
| Q |
131 |
tacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaat |
188 |
Q |
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| T |
804036 |
tacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaat |
803979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 2458624 - 2458680
Alignment:
| Q |
125 |
gcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaatt |
181 |
Q |
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| T |
2458624 |
gcaggctaccagtgaagctcctccttcaacttcgttgcttatgcaagtcgtggaatt |
2458680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 22673005 - 22672889
Alignment:
| Q |
77 |
cactaccgctgccaactcttccttttgaactcattgaggaaattttaagcagactacctgtgaagctcctccttcaactccgatgctcttgcaagtcatg |
176 |
Q |
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|||| ||||||||||||||||||||||| |||||||| ||||| | || || |||| ||||||||||||||||| |||| |||| | ||||||||||| |
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| T |
22673005 |
cactgccgctgccaactcttccttttgatctcattgaagaaatccttagtaggttaccggtgaagctcctccttcagctccaatgcgcctgcaagtcatg |
22672906 |
T |
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| Q |
177 |
gaattctttaatctctg |
193 |
Q |
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||||||| ||||||||| |
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| T |
22672905 |
gaattctctaatctctg |
22672889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 1428567 - 1428508
Alignment:
| Q |
130 |
ctacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatc |
189 |
Q |
| |
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||||| ||||| ||||||||||||||||||||| ||||||| |||| |||||| ||||| |
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| T |
1428567 |
ctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaatc |
1428508 |
T |
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