View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5630_high_2 (Length: 410)
Name: NF5630_high_2
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5630_high_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 44849485 - 44849083
Alignment:
| Q |
8 |
ccaagaatatcttccaagctggaatagtagttgtccaatgtttccatgaactcacaaggttattctttctatgtttattataatcacatgcttgattatt |
107 |
Q |
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| T |
44849485 |
ccaaaaatatcttccaagctggaatagtagttgtccaatgtttccatgaactcacaaggttattcattctatgtttattataatcacatgcttgattatt |
44849386 |
T |
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| Q |
108 |
atagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttagataaacc |
207 |
Q |
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| T |
44849385 |
atagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttagataaacc |
44849286 |
T |
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| Q |
208 |
ccgttataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatg |
307 |
Q |
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| T |
44849285 |
ccgttataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatg |
44849186 |
T |
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| Q |
308 |
gtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcagttgaagacaaagagtatcttccgagtccacc |
407 |
Q |
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| T |
44849185 |
gtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcaattgaagacaaagagtatcttccgagtccacc |
44849086 |
T |
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| Q |
408 |
gcc |
410 |
Q |
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| T |
44849085 |
gcc |
44849083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 398
Target Start/End: Complemental strand, 44838317 - 44838008
Alignment:
| Q |
101 |
gattattatagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttag |
200 |
Q |
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| T |
44838317 |
gattattgtaaaattgtacccaaacaaagtcaaaaagacctgtttcaagtgcagtgcccaaaaatttatctggaattggacattgaggagcagcaccaag |
44838218 |
T |
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| Q |
201 |
ataaacc------ccgt------tataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatct |
288 |
Q |
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| T |
44838217 |
atacaccttttttccatatctactataccctttaagaaaacctgcaaggtgttgccaattttcggtggaaccaagttcaatatcaaaatctattccatct |
44838118 |
T |
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| Q |
289 |
aacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcagttgaagacaaag |
388 |
Q |
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| T |
44838117 |
aaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccataaaaattttgaaacgtttcttgcatcctcaattgaagataaag |
44838018 |
T |
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| Q |
389 |
agtatcttcc |
398 |
Q |
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| T |
44838017 |
aatagcttcc |
44838008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 44817309 - 44817227
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
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| T |
44817309 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
44817227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 44834666 - 44834584
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
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| T |
44834666 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata |
44834584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Original strand, 17570995 - 17571077
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
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| T |
17570995 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
17571077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 48222511 - 48222567
Alignment:
| Q |
258 |
accaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttga |
314 |
Q |
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| T |
48222511 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
48222567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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