View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5630_high_8 (Length: 291)

Name: NF5630_high_8
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5630_high_8
NF5630_high_8
[»] chr7 (5 HSPs)
chr7 (74-270)||(31105747-31105942)
chr7 (1-72)||(32358325-32358395)
chr7 (1-74)||(22269581-22269653)
chr7 (1-68)||(3258608-3258674)
chr7 (1-72)||(29608350-29608420)
[»] chr6 (5 HSPs)
chr6 (74-267)||(14522082-14522273)
chr6 (1-68)||(2973429-2973495)
chr6 (1-68)||(5043241-5043307)
chr6 (224-271)||(3601895-3601940)
chr6 (1-49)||(3809198-3809245)
[»] chr8 (3 HSPs)
chr8 (74-203)||(3000113-3000242)
chr8 (77-271)||(19492061-19492254)
chr8 (1-75)||(3000010-3000084)
[»] chr1 (13 HSPs)
chr1 (74-271)||(13138350-13138546)
chr1 (77-271)||(41360527-41360720)
chr1 (1-68)||(47114786-47114851)
chr1 (1-68)||(34602828-34602894)
chr1 (1-68)||(34603189-34603255)
chr1 (1-72)||(47255823-47255893)
chr1 (1-61)||(28242009-28242067)
chr1 (1-68)||(7482720-7482786)
chr1 (1-68)||(37167909-37167976)
chr1 (8-69)||(22078953-22079014)
chr1 (1-69)||(41135432-41135499)
chr1 (1-72)||(29135857-29135927)
chr1 (155-271)||(47256021-47256132)
[»] chr3 (10 HSPs)
chr3 (74-271)||(21353972-21354167)
chr3 (1-68)||(41820010-41820078)
chr3 (1-74)||(28074224-28074296)
chr3 (1-72)||(40912946-40913017)
chr3 (1-72)||(54593313-54593383)
chr3 (4-68)||(46860084-46860146)
chr3 (1-69)||(35139203-35139270)
chr3 (1-31)||(26324002-26324032)
chr3 (1-49)||(4569583-4569630)
chr3 (1-49)||(36018482-36018529)
[»] chr2 (6 HSPs)
chr2 (146-271)||(2837562-2837686)
chr2 (76-141)||(2837671-2837736)
chr2 (4-68)||(42288601-42288663)
chr2 (123-166)||(2837598-2837641)
chr2 (1-72)||(17450200-17450270)
chr2 (214-270)||(1344089-1344145)
[»] chr4 (8 HSPs)
chr4 (1-68)||(12073005-12073072)
chr4 (1-68)||(41964029-41964095)
chr4 (1-60)||(50263187-50263245)
chr4 (1-68)||(378992-379057)
chr4 (1-69)||(3785702-3785769)
chr4 (4-69)||(22883245-22883309)
chr4 (4-69)||(22934909-22934973)
chr4 (36-72)||(41639174-41639210)
[»] chr5 (5 HSPs)
chr5 (1-74)||(28277920-28277994)
chr5 (1-68)||(27638103-27638169)
chr5 (207-270)||(16642599-16642662)
chr5 (1-72)||(5057658-5057727)
chr5 (4-61)||(30792860-30792916)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 31105747 - 31105942
Alignment:
Q  74 atcgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaa 173  Q
    ||||||||| |||||||||  ||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| || | |    
T  31105747 atcgtactacgatggagcaaataatagtataatactatgccttatccaacaaaatcgtactacgatttctcccatcgtactgcgatttttccagtgccta 31105846  T
Q  174 ctcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaa 270  Q
    | ||||||||| | || |||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31105847 cacaaacctgaactattcaaaatcgtactacgatgc-ctgcaatcgtactacgatttttccagaacttcaacatccaaattttgagtcaattttcaa 31105942  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32358325 - 32358395
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||||| |||||||||||    
T  32358325 tcctttggtttccatgagattcaccaagc-tttttcaacaaatgggtcatggagtgcttacatagtgttcag 32358395  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22269653 - 22269581
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcagga 74  Q
    ||||||||||||||||||||||||||| |||    ||||||||||||||| |||||||||||||||||||||||    
T  22269653 tcctttggtttccatgagattcaccaagcttgcc-caacaaatgggtcatgaagtgcttaaatagtgttcagga 22269581  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3258674 - 3258608
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    |||| ||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  3258674 tcctctggtttccatgagattcaccaag-ttttttcaccaaatgggtcatagagtgcttaaatagtgt 3258608  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29608420 - 29608350
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| | ||| |||||| |||||||| | | |||||| || ||||||||    
T  29608420 tcctttggtttccatgagattcaccaagc-tttatcaacatatgggtcaaagaatgcttatattgtgttcag 29608350  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 74 - 267
Target Start/End: Original strand, 14522082 - 14522273
Alignment:
Q  74 atcgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaa 173  Q
    |||||| || |||||||||||||||| || ||||||||||||| |||| ||| |||| |||||||| |||||||||||||||| |||||||||||| | |    
T  14522082 atcgtattacgatggagcaggtaacaatacagtactatgccttatccaacaacatcgcactacgatatctcccatcgtactacaatttttccaatgccta 14522181  T
Q  174 ctcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaatttt 267  Q
    | ||||||||| ||||||||||| |||||||||||| || | |||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  14522182 cacaaacctgaaccatccaaaatcgtactacgatgc-ctgccatcgtactac-aattttccataacttcaatatccaaattttgagtcaatttt 14522273  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2973429 - 2973495
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    |||||||||||||||||||||||||||  | | || ||||||||||||||||||||||||||||||||    
T  2973429 tcctttggtttccatgagattcaccaaggtctctt-aacaaatgggtcataaagtgcttaaatagtgt 2973495  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5043307 - 5043241
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||| ||||||||||||||||||| ||  ||| || |||||||||||| ||||||||||||||||    
T  5043307 tcctttgatttccatgagattcaccaagctccttt-aataaatgggtcatagagtgcttaaatagtgt 5043241  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 3601895 - 3601940
Alignment:
Q  224 acgatttttccagaacttcaatatccaaattttgagtcaattttcaac 271  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||||||    
T  3601895 acgattttttcagaacttcaatatc--aattttgaatcaattttcaac 3601940  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3809198 - 3809245
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtca 49  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  3809198 tcctttggtttccatgagattcaccaagc-ttgctcaacaaatgggtca 3809245  T

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Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 3000113 - 3000242
Alignment:
Q  74 atcgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaa 173  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||    
T  3000113 atcgtactaggatggagcaggtgacagtacaatactatgccttgtccatcaaaatcgtactacgatttctcccatcgtgctacaatttttccaatgacaa 3000212  T
Q  174 ctcaaacctgagccatccaaaattgtacta 203  Q
    ||||||||||| ||||||||||| ||||||    
T  3000213 ctcaaacctgaaccatccaaaatcgtacta 3000242  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 271
Target Start/End: Original strand, 19492061 - 19492254
Alignment:
Q  77 gtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaactc 176  Q
    |||||| |||||||||| || ||||| | ||||||||||| |||| |||||||||||||| || | || |||||||||||||||||||||    | || |    
T  19492061 gtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtactacgatttttccagaacctacac 19492160  T
Q  177 aaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaac 271  Q
    ||| | || ||||||||||| |||||||||||| || | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  19492161 aaaaccgaaccatccaaaatcgtactacgatgc-ctgccatcgtactatgatttttccagaacttcaacatccaaattttgagtcaattttcaac 19492254  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3000010 - 3000084
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcaggat 75  Q
    |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||| |||||| |||||    
T  3000010 tcctttggtttctatgagattcaccaaggttttttcaacaattgggtcataaagtgcttaaacagtgtttaggat 3000084  T

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Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 13138350 - 13138546
Alignment:
Q  74 atcgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaa 173  Q
    ||||||||| |||||||||| ||||| || ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| || | |    
T  13138350 atcgtactacgatggagcagataacaatacagtactatgccttatccaacaaaatcgtactacgatatctcccatcgtactacgatttttccagtgccta 13138449  T
Q  174 ctcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaac 271  Q
    | ||||||||| | | |||||||  |||||||||| | |   |||||||||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  13138450 cgcaaacctgaactacccaaaatcatactacgatg-tttgtcatcgtactacgacttttccagaacttcaacatccaaattttgagtagattttcaac 13138546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 271
Target Start/End: Complemental strand, 41360720 - 41360527
Alignment:
Q  77 gtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaactc 176  Q
    |||||| |||||||||| || ||||| | ||||||||||| |||| |||||||||||||| || | || |||||||||||||||||||||    | || |    
T  41360720 gtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtactacgatttttccagaacctacac 41360621  T
Q  177 aaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaac 271  Q
    ||| | || ||||||||||| |||||||||||| || | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  41360620 aaaaccgaaccatccaaaatcgtactacgatgc-ctgccatcgtactatgatttttccagaacttcaacatccaaattttgagtcaattttcaac 41360527  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47114851 - 47114786
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||    
T  47114851 tcctttggtttccatgagattcaccaaacttttt--aacaaatggatcatagagtgcttaaatagtgt 47114786  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34602828 - 34602894
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||||    
T  34602828 tcctttggtttccatgagattcaccaagcttttc-caacaaatgggtcatagagtgcttaaatagtgt 34602894  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34603255 - 34603189
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||||    
T  34603255 tcctttggtttccatgagattcaccaagcttttc-caacaaatgggtcatagagtgcttaaatagtgt 34603189  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47255823 - 47255893
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| |||    ||||||||||||||| |||||||||||||||||||||    
T  47255823 tcctttggtttccatgagattcaccaagcttacc-caacaaatgggtcatgaagtgcttaaatagtgttcag 47255893  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28242067 - 28242009
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaa 61  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  28242067 tcctttggttttcatgagattcaccaaacttttt--aacaaatgggtcatagagtgcttaa 28242009  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7482720 - 7482786
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||||| || ||||  ||||||||||||  |||||||||||||||    
T  7482720 tcctttggtttccatgagattcaccaaac-ttattcactaaatgggtcatagtgtgcttaaatagtgt 7482786  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37167976 - 37167909
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||| |||||||||||||| |||| | | ||||| ||||||||||||| ||||||||||||||||    
T  37167976 tcctttgatttccatgagattccccaagcctatttcaccaaatgggtcatagagtgcttaaatagtgt 37167909  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 22079014 - 22078953
Alignment:
Q  8 gtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    |||||||| ||||||||||||||||  ||| |||||||||||   |||||||||||||||||    
T  22079014 gtttccataagattcaccaaactttaatcatcaaatgggtcaaggagtgcttaaatagtgtt 22078953  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41135499 - 41135432
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    ||||||||||||||||||||| ||||| | || ||||||||||||||||   || ||||||||||||||    
T  41135499 tcctttggtttccatgagattaaccaagc-ttattcaacaaatgggtcaagcagcgcttaaatagtgtt 41135432  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29135927 - 29135857
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| | ||  ||||||||||||||| | | |||||| || ||||||||    
T  29135927 tcctttggtttccatgagattcaccaagc-ttactcaacaaatgggtcaaagaatgcttatattgtgttcag 29135857  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 47256021 - 47256132
Alignment:
Q  155 acgatttttccaatggcaactcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaatt 254  Q
    |||||||||||| || |||||||||||||| ||||||||  | || | ||| ||| || ||| ||| | |||||||||||||| |||||  |||  ||||    
T  47256021 acgatttttccagtgacaactcaaacctgaaccatccaa--tcgtgccacgttgcactgcaaacgtgccacgatttttccaga-cttcaccatc--aatt 47256115  T
Q  255 ttgagtcaattttcaac 271  Q
    |||||||||||||||||    
T  47256116 ttgagtcaattttcaac 47256132  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 271
Target Start/End: Original strand, 21353972 - 21354167
Alignment:
Q  74 atcgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgatttctcccatcgtactacgatttttccaatggcaa 173  Q
    ||||||||| |||||||||| |||||||| | || |||||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||| || |||    
T  21353972 atcgtactatgatggagcagataacagtacaatattatgccttatccaacaaaatcgtactgtgatttctcccatcgtactacga-ttttccagtgccaa 21354070  T
Q  174 ctcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaac 271  Q
    | | | ||||| ||||||||||| ||||||| |||| || | |||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||    
T  21354071 cactagcctgaaccatccaaaatcgtactaccatgccctgc-atcgtactacaatttttccaaaacttcaacatccaaattttaagtcaattttcaac 21354167  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41820010 - 41820078
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaac-aaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||    
T  41820010 tcctttggtttccatgagattcaccaagcttttttcaccaaaatgggtcatagagtgcttaaatagtgt 41820078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28074296 - 28074224
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcagga 74  Q
    ||||||||||||||||||||||||||| |||    ||||||||||||||| |||||||||||||| ||||||||    
T  28074296 tcctttggtttccatgagattcaccaagcttacc-caacaaatgggtcatgaagtgcttaaatagagttcagga 28074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40913017 - 40912946
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| ||||   |||||||||||||| | | |||||| |||||||||||    
T  40913017 tcctttggtttccatgagattcaccaagctttacccaacaaatgggtcaaagaatgcttacatagtgttcag 40912946  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 54593383 - 54593313
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||||| | ||||  ||||||||||||||  |||||||| |||||||||||    
T  54593383 tcctttggtttccatgagattcaccaagc-ttttcgaacaaatgggtcatggagtgcttacatagtgttcag 54593313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 46860146 - 46860084
Alignment:
Q  4 tttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    |||||||||||||||||||||||| || |||  ||||||||| ||||| ||||||||||||||||    
T  46860146 tttggtttccatgagattcaccaagctcttt--aacaaatggatcatagagtgcttaaatagtgt 46860084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35139203 - 35139270
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    ||||||||||||||||| ||||||||| |||  || ||||||||||||| | |||| ||||||||||||    
T  35139203 tcctttggtttccatgaaattcaccaagcttactt-aacaaatgggtcaaagagtgtttaaatagtgtt 35139270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26324002 - 26324032
Alignment:
Q  1 tcctttggtttccatgagattcaccaaactt 31  Q
    |||||||||||||||||||||||||||||||    
T  26324002 tcctttggtttccatgagattcaccaaactt 26324032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4569630 - 4569583
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtca 49  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  4569630 tcctttggtttccatgagattcaccaagc-ttactcaacaaatgggtca 4569583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36018529 - 36018482
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtca 49  Q
    ||||||||||||||||||||||||||| | || | ||||||||||||||    
T  36018529 tcctttggtttccatgagattcaccaagc-ttatccaacaaatgggtca 36018482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 2837686 - 2837562
Alignment:
Q  146 catcgtactacgatttttccaatggcaactcaaacctgagccatccaaaattgtactacgatgctctacaatcgtactacgatttttccagaacttcaat 245  Q
    ||||||||||||||||||||| |  | || ||||| ||| ||||||||||| ||||||||||| ||| | |||||||||||||||||||| ||||||||     
T  2837686 catcgtactacgatttttccagtacctacacaaacttgaaccatccaaaatcgtactacgatg-tcttccatcgtactacgatttttccataacttcaac 2837588  T
Q  246 atccaaattttgagtcaattttcaac 271  Q
    ||||||||||| ||||||||||||||    
T  2837587 atccaaattttaagtcaattttcaac 2837562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 2837736 - 2837671
Alignment:
Q  76 cgtactaggatggagcaggtaacagtatagtactatgccttgtccatcaaaatcgtactacgattt 141  Q
    ||||||| ||||||||||||||||||| ||||||||||||  |||| ||| |||||||||||||||    
T  2837736 cgtactacgatggagcaggtaacagtacagtactatgcctaatccaacaacatcgtactacgattt 2837671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 42288601 - 42288663
Alignment:
Q  4 tttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    |||||||||||||||||||||| | ||||||  ||||||||||||||| ||||||||||||||||    
T  42288601 tttggtttccatgagattcacctagcttttt--aacaaatgggtcatagagtgcttaaatagtgt 42288663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 2837641 - 2837598
Alignment:
Q  123 caaaatcgtactacgatttctcccatcgtactacgatttttcca 166  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  2837641 caaaatcgtactacgatgtcttccatcgtactacgatttttcca 2837598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17450270 - 17450200
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    |||||||||||||||||||||| | ||  |||   ||||||||||||||| |||||||||||||||||||||    
T  17450270 tcctttggtttccatgagattctctaag-tttgcccaacaaatgggtcatgaagtgcttaaatagtgttcag 17450200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 1344145 - 1344089
Alignment:
Q  214 caatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaa 270  Q
    ||||||||||||||||||| || ||||| || || |||| |||||||||||||||||    
T  1344145 caatcgtactacgattttttcaaaacttaaacattcaaactttgagtcaattttcaa 1344089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12073072 - 12073005
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  12073072 tcctttggtttccatgagattcaccaagctttttttaacaaatgggtcataaagtgcttaaacagtgt 12073005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41964095 - 41964029
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||| ||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||    
T  41964095 tcctttgatttccatgagattcaccaaac-tttctcaccaaatgggtcatagagtgcttaaatagtgt 41964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50263187 - 50263245
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgctta 60  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  50263187 tcctttggttttcatgagattcaccaaac-tttttcaacaaatgggtcaaagagtgctta 50263245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 379057 - 378992
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    |||||||||||||| |||||||||||| || |||  ||||||||||||||| | ||||||||||||||    
T  379057 tcctttggtttccacgagattcaccaagctcttt--aacaaatgggtcatagattgcttaaatagtgt 378992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3785769 - 3785702
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    ||||||| |||||||||||| ||||||||||  | ||||||||||||||   |||||||||||||||||    
T  3785769 tcctttgatttccatgagatccaccaaacttact-caacaaatgggtcaagtagtgcttaaatagtgtt 3785702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22883245 - 22883309
Alignment:
Q  4 tttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    |||||||||||||||||||||||| | ||  ||||||||||||| |   |||||||||||||||||    
T  22883245 tttggtttccatgagattcaccaagc-ttactcaacaaatgggttaaggagtgcttaaatagtgtt 22883309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22934909 - 22934973
Alignment:
Q  4 tttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgtt 69  Q
    |||||||||||||||||||||||| | ||  ||||||||||||| |   |||||||||||||||||    
T  22934909 tttggtttccatgagattcaccaagc-ttactcaacaaatgggttaaggagtgcttaaatagtgtt 22934973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 41639210 - 41639174
Alignment:
Q  36 caacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  41639210 caacaaatgggtcatgaagtgcttacatagtgttcag 41639174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28277994 - 28277920
Alignment:
Q  1 tcctttggtttccatgagattcaccaaactt-ttttcaacaaatgggtcataaagtgcttaaatagtgttcagga 74  Q
    |||||| |||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28277994 tcctttagtttccttgagattcaccaagcttattttcaacaaatgggtcatgaagtgcttaaatagtgttcagga 28277920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27638103 - 27638169
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgt 68  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||    
T  27638103 tcctttggtttccatgagattcaccaagccttttt-aacaaatgggtcatagagtgcttaaatagtgt 27638169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 16642599 - 16642662
Alignment:
Q  207 tgctctacaatcgtactacgatttttccagaacttcaatatccaaattttgagtcaattttcaa 270  Q
    |||||| ||| ||| | |||||||||||||||||| || |||||||||||||||||||||||||    
T  16642599 tgctctgcaaacgtgccacgatttttccagaactttaacatccaaattttgagtcaattttcaa 16642662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5057727 - 5057658
Alignment:
Q  1 tcctttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaaatagtgttcag 72  Q
    ||||||||||||||||||||||||| | || |||  ||||||||||||||  |||||||| |||||||||||    
T  5057727 tcctttggtttccatgagattcacccagctcttt--aacaaatgggtcatggagtgcttacatagtgttcag 5057658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 30792916 - 30792860
Alignment:
Q  4 tttggtttccatgagattcaccaaacttttttcaacaaatgggtcataaagtgcttaa 61  Q
    |||||||||||||||||||||||| |||  || |||||||||||||  ||||||||||    
T  30792916 tttggtttccatgagattcaccaagcttactt-aacaaatgggtcaagaagtgcttaa 30792860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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