View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5630_low_7 (Length: 310)

Name: NF5630_low_7
Description: NF5630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5630_low_7
NF5630_low_7
[»] chr3 (13 HSPs)
chr3 (11-310)||(988883-989182)
chr3 (200-252)||(1891515-1891567)
chr3 (123-170)||(997197-997244)
chr3 (123-170)||(1013587-1013634)
chr3 (196-254)||(955921-955979)
chr3 (12-90)||(968387-968465)
chr3 (206-252)||(1004028-1004074)
chr3 (206-252)||(1022025-1022071)
chr3 (48-90)||(1937294-1937336)
chr3 (49-90)||(1931469-1931510)
chr3 (203-248)||(1941027-1941072)
chr3 (195-248)||(2697190-2697243)
chr3 (203-252)||(2931466-2931515)
[»] chr4 (2 HSPs)
chr4 (123-170)||(22672519-22672566)
chr4 (210-254)||(20020248-20020292)
[»] chr8 (2 HSPs)
chr8 (200-252)||(31144847-31144899)
chr8 (203-252)||(19727414-19727463)
[»] chr5 (5 HSPs)
chr5 (207-251)||(23754491-23754535)
chr5 (207-251)||(23774525-23774569)
chr5 (207-251)||(23819946-23819990)
chr5 (207-251)||(23861478-23861522)
chr5 (224-252)||(23691511-23691539)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 989182 - 988883
Alignment:
Q  11 caaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaattaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989182 caaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaattaaa 989083  T
Q  111 cgtaaaaagactacaaccttgtaattatcaccaacaggatcatatccgaagccatacatcctcataacttgcctttgttttttcggctcttgaagagggg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||    
T  989082 cgtaaaaagactacaaccttgtaattatcaccaacaggatcatatccgaagccatacatcctcataacgtgcttttgtttttttggctcttgaagaaggg 988983  T
Q  211 gcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagtttgaatcatcatcagcagcaagacagaggatgccattacacgagcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  988982 gcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagtttgaatcatcagcagcagcaagacagaggatgccatcacacgagcc 988883  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 1891515 - 1891567
Alignment:
Q  200 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  1891515 ttgaagagagggcaattccttaaattttctaatggaagggttccacaatcgaa 1891567  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 997244 - 997197
Alignment:
Q  123 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 170  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  997244 acaaccttgtaattatcactaacagggtcatatccgaagccatacatc 997197  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 1013634 - 1013587
Alignment:
Q  123 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 170  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  1013634 acaaccttgtaattatcactaacagggtcatatccgaagccatacatc 1013587  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 955979 - 955921
Alignment:
Q  196 gctcttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaaca 254  Q
    |||||| |||||||||||| |||||   ||||||||| |||||||| ||||||||||||    
T  955979 gctcttcaagagggggcaaatccttgaattttctaatagaagggttacacaatcgaaca 955921  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 968465 - 968387
Alignment:
Q  12 aaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattac 90  Q
    |||||||| |||  |||| ||||||||| | | || ||||||||||||||| ||||||| | ||| |||||||||||||    
T  968465 aaagggaacttctgaatgctttcccaagcattggtgcccaaagtatgaaccatcactttgtctttttcaacaaaattac 968387  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 1004074 - 1004028
Alignment:
Q  206 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1004074 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1004028  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 1022071 - 1022025
Alignment:
Q  206 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1022071 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1022025  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 1937294 - 1937336
Alignment:
Q  48 cccaaagtatgaaccttcactttatatttgtcaacaaaattac 90  Q
    |||||||||||||||||||||| ||  ||||||||||||||||    
T  1937294 cccaaagtatgaaccttcacttcatggttgtcaacaaaattac 1937336  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 1931469 - 1931510
Alignment:
Q  49 ccaaagtatgaaccttcactttatatttgtcaacaaaattac 90  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  1931469 ccaaagtatgaaccttcacttcatggttgtcaacaaaattac 1931510  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 1941027 - 1941072
Alignment:
Q  203 aagagggggcaattccttatcttttctaatggaagggttccacaat 248  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||    
T  1941027 aagagagggcaattccttgaattttctaatggaagggttccacaat 1941072  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 2697190 - 2697243
Alignment:
Q  195 ggctcttgaagagggggcaattccttatcttttctaatggaagggttccacaat 248  Q
    |||| ||||| || |||||||||||||  ||||||||| |||||||||||||||    
T  2697190 ggcttttgaaaagagggcaattccttaaattttctaattgaagggttccacaat 2697243  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 2931515 - 2931466
Alignment:
Q  203 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    ||||| ||||||||||||   ||||| |||||||||||||||||||||||    
T  2931515 aagagagggcaattccttgaattttcgaatggaagggttccacaatcgaa 2931466  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 22672519 - 22672566
Alignment:
Q  123 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 170  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  22672519 acaaccttgtaattatcactaacagggtcatatccgaagcaatacatc 22672566  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 20020248 - 20020292
Alignment:
Q  210 ggcaattccttatcttttctaatggaagggttccacaatcgaaca 254  Q
    |||||||||||   ||||||||||||||||||||||||| |||||    
T  20020248 ggcaattccttgaattttctaatggaagggttccacaatagaaca 20020292  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 31144847 - 31144899
Alignment:
Q  200 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    |||||||  ||||||||||||   |||||||||||||||||||||||||||||    
T  31144847 ttgaagatagggcaattccttgaattttctaatggaagggttccacaatcgaa 31144899  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 19727463 - 19727414
Alignment:
Q  203 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 252  Q
    |||||||||||| |||||   |||||||| ||||||||||||||||||||    
T  19727463 aagagggggcaagtccttgaattttctaacggaagggttccacaatcgaa 19727414  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 23754491 - 23754535
Alignment:
Q  207 gggggcaattccttatcttttctaatggaagggttccacaatcga 251  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23754491 gggggcaattccttgaattttctaatggaagggttccacaatcga 23754535  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 23774525 - 23774569
Alignment:
Q  207 gggggcaattccttatcttttctaatggaagggttccacaatcga 251  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23774525 gggggcaattccttgaattttctaatggaagggttccacaatcga 23774569  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 23819946 - 23819990
Alignment:
Q  207 gggggcaattccttatcttttctaatggaagggttccacaatcga 251  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23819946 gggggcaattccttgaattttctaatggaagggttccacaatcga 23819990  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 23861478 - 23861522
Alignment:
Q  207 gggggcaattccttatcttttctaatggaagggttccacaatcga 251  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23861478 gggggcaattccttgaattttctaatggaagggttccacaatcga 23861522  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 23691539 - 23691511
Alignment:
Q  224 ttttctaatggaagggttccacaatcgaa 252  Q
    |||||||||||||||||||||||||||||    
T  23691539 ttttctaatggaagggttccacaatcgaa 23691511  T

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