View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5631-Insertion-2 (Length: 526)

Name: NF5631-Insertion-2
Description: NF5631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5631-Insertion-2
NF5631-Insertion-2
[»] scaffold0536 (3 HSPs)
scaffold0536 (8-526)||(9830-10348)
scaffold0536 (10-526)||(5848-6366)
scaffold0536 (26-162)||(812-948)
[»] chr4 (6 HSPs)
chr4 (8-526)||(48911680-48912200)
chr4 (368-526)||(48965650-48965810)
chr4 (325-526)||(48958468-48958671)
chr4 (306-435)||(48962708-48962837)
chr4 (26-162)||(48951927-48952063)
chr4 (92-162)||(48974787-48974857)
[»] chr6 (2 HSPs)
chr6 (291-523)||(12589787-12590021)
chr6 (415-523)||(12483206-12483316)
[»] chr5 (2 HSPs)
chr5 (351-486)||(28385697-28385832)
chr5 (351-406)||(12541128-12541183)
[»] chr2 (2 HSPs)
chr2 (351-484)||(13448728-13448861)
chr2 (324-438)||(13440611-13440725)


Alignment Details
Target: scaffold0536 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 9830 - 10348
Alignment:
8 cgaccacccatccaacacttcgtggagcagcacccaccggattgcatcgtgacggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
9830 cgaccacccatccaacacttcgtggagcagcacccaccggattgcatcgtgacagattttttgtttccttgggttgatgaacttgcaaacaagcttcaaa 9929  T
108 ttccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaattcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9930 ttccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaattcc 10029  T
208 tggtcttcctcattctattgtcatgaatgcaacaccgcttaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagcaacggaatc 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | || |||    
10030 tggtcttcctcattctattgtcatgaatgcaacaccgcctaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagtcaagggatc 10129  T
308 attgttaacaattttgctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttg 407  Q
     |||| || |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||    
10130 cttgtcaataattttgtagaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttagtccagcttatcttg 10229  T
408 ttcgtagaactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagatatcagttt 507  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
10230 ttcgtagaactgttcaagagaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagatatcagtgt 10329  T
508 tgtacatttgctttggaag 526  Q
    |||||||||||||||||||    
10330 tgtacatttgctttggaag 10348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 526
Target Start/End: Original strand, 5848 - 6366
Alignment:
10 accacccatccaacacttcgtggagcagcacccaccggattgcatcgtgacggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
5848 accacccatccaacacttcgtggagcagcacccaccggattgcattgtggcggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaatt 5947  T
110 ccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaattcctg 209  Q
    || ||||||  |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || |||||| |||||||||||||    
5948 cctagactcagtttcaacggtttctctctgtttgcaatttgtgccatagaatctgttaaagcacactctctttatgaatctgcttcatttgtaattcctg 6047  T
210 gtcttcctcattctattgtcatgaatgcaacaccgcttaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagcaacggaatcat 309  Q
    |||||||||||||||||| |||||||||| | ||||  ||||||||||||||  | |||| || || |||||||| ||||||||||||||||||||||||    
6048 gtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagcaacggaatcat 6147  T
310 tgttaacaattttgctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttgtt 409  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||| |||||| || ||    
6148 tgttaacaatttttctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttatt 6247  T
410 cgtagaactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttt 507  Q
    ||||||||||||||||| |||||| |||| ||| |||| |||| ||||||||||||||||||||||||||||||  ||| ||||| |||||  ||||| |    
6248 cgtagaactgttcaagaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgt 6347  T
508 tgtacatttgctttggaag 526  Q
    ||||||| |||||||||||    
6348 tgtacatatgctttggaag 6366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 812 - 948
Alignment:
26 ttcgtggagcagcacccaccggattgcatcgtgacggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaattccaagactctctttca 125  Q
    |||||||| ||| | ||||| |||||||||||  ||||||| || || |||||||| ||||| || |||||||||||||| ||||| ||| |  | ||||    
812 ttcgtggaacaggaaccacctgattgcatcgtagcggattttttattcccttgggtggatgagctggcaaacaagcttcacattccgagatttgccttca 911  T
126 acggtttctctctgtttgctatttgtgccatggaatc 162  Q
    |||||||||| || ||| | || ||||||||||||||    
912 acggtttctcactatttaccatatgtgccatggaatc 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 48911680 - 48912200
Alignment:
8 cgaccacccatccaacacttcgtggagcagcacccaccggattgcatcgtgacggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaa 107  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||| ||| |||||||||| ||||||||||||||||||| ||||    
48911680 cgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtggctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaa 48911779  T
108 ttccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaattcc 207  Q
    |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||    
48911780 ttcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactctctttatgaatctgcttcttttgtaattcc 48911879  T
208 tggtcttcctcattctattgtcatgaatgcaacaccgcttaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagcaacggaatc 307  Q
    |  ||||||||||||||||| |||||||||| |||| |  |||||| ||||| || | |||| || || | | ||||  ||||||||||| |||||||||    
48911880 tcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattattggaagcgcttcttgagacagttttcaaaagtaacggaatc 48911979  T
308 attgttaacaattttgctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttg 407  Q
     |||| |||||||||||||||||||||||| || |||| |||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||| ||     
48911980 cttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctctta 48912079  T
408 ttcgtagaactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagt 505  Q
    |||| |||||| |||||||||| || |||||||||||| |||||| |||||||||||| |||||| |||||||||| |||| ||| | |||||  || ||    
48912080 ttcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggt 48912179  T
506 tttgtacatttgctttggaag 526  Q
      ||||||| |||||||||||    
48912180 ggtgtacatatgctttggaag 48912200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 526
Target Start/End: Complemental strand, 48965810 - 48965650
Alignment:
368 acgggtcagaaagcttggcatcttcgtccagcttcttttgttcgtagaactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatg 467  Q
    |||||||| || |||||||||||| ||||||||||| || |||||| |||||||||||||||||||||||| ||| || ||||||| ||||| ||||| |    
48965810 acgggtcataaggcttggcatcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaag 48965711  T
468 agtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttggaag 526  Q
    ||||| ||||||||||||| |  |||||| |||  ||||| ||||||||  ||||||||||    
48965710 agtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaag 48965650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 526
Target Start/End: Complemental strand, 48958671 - 48958468
Alignment:
325 tgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttgttcgtagaactgttcaa 424  Q
    ||||||||| ||| || ||| ||||||||||||||||||||  |||||||| || | |||||||||| |||| |||||| || ||||   |||  |||||    
48958671 tgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaa 48958572  T
425 gagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtacatttgctttg 522  Q
    |||||| ||||||| ||| |  ||| || ||| ||||||||||  |||||||||||||||||||||||| || |||  ||||| |||||||| |||||||    
48958571 gagaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttg 48958472  T
523 gaag 526  Q
    ||||    
48958471 gaag 48958468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 435
Target Start/End: Complemental strand, 48962837 - 48962708
Alignment:
306 tcattgttaacaattttgctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttt 405  Q
    ||||||| ||||| || ||||||||||||||| || ||| ||||||||||||| ||||||| |||||||| || |||||||||||  |||||| |||| |    
48962837 tcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctct 48962738  T
406 tgttcgtagaactgttcaagagaaagcaga 435  Q
    | |||| | | | |||||||||||||||||    
48962737 tattcgcaaatccgttcaagagaaagcaga 48962708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 48952063 - 48951927
Alignment:
26 ttcgtggagcagcacccaccggattgcatcgtgacggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaattccaagactctctttca 125  Q
    |||||||||||||||||||| |||||||||||| ||||||| || || || |||| |||||| || ||||| ||||| || ||||| ||| ||   ||||    
48952063 ttcgtggagcagcacccacctgattgcatcgtggcggattttttattcccgtgggctgatgagctagcaaagaagctgcacattccgagattcgtgttca 48951964  T
126 acggtttctctctgtttgctatttgtgccatggaatc 162  Q
    |||||||||| || ||| | || ||||||||||||||    
48951963 acggtttctcactctttaccatatgtgccatggaatc 48951927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 48974857 - 48974787
Alignment:
92 gcaaacaagcttcaaattccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatc 162  Q
    |||||||  ||||| ||||| |||||| | |||||||||||||| || ||||| || ||||||||||||||    
48974857 gcaaacagacttcacattcccagactcgccttcaacggtttctcactctttgccatatgtgccatggaatc 48974787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 291 - 523
Target Start/End: Original strand, 12589787 - 12590021
Alignment:
291 tcaaaagcaacggaatcattgttaacaattttgctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatct 390  Q
    ||||||| || ||| ||||||||||||| || ||||||||||| ||  || |||   || |||||||  ||||||| || ||||| || |||||||||||    
12589787 tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct 12589886  T
391 tcgtccagcttcttttgttcgtagaactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttg 490  Q
    | ||||||||||| || |||  | ||||||||||||||||||||| || ||| |  |||||| |||||  ||||| ||||||||||||||||| |||| |    
12589887 tggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcg 12589986  T
491 aagcgagata--tcagttttgtacatttgctttgg 523  Q
    ||||||||||  || || |||||||| ||||||||    
12589987 aagcgagataactctgtgttgtacatatgctttgg 12590021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 523
Target Start/End: Original strand, 12483206 - 12483316
Alignment:
415 aactgttcaagagaaagcagagagaggagaacagagtgctgtgagtgtgcatgagtgtctgagttggctcaacttgaagcgagata--tcagttttgtac 512  Q
    |||||||||||| || |||||||| ||| |  |||||| |||||| |||||||||||||  |||||||| ||||  |||| ||| |  ||||| ||||||    
12483206 aactgttcaagaaaaggcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtac 12483305  T
513 atttgctttgg 523  Q
    || ||||||||    
12483306 atatgctttgg 12483316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 486
Target Start/End: Complemental strand, 28385832 - 28385697
Alignment:
351 aacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttgttcgtagaactgttcaagagaaagcagagagaggagaacagag 450  Q
    |||||||| ||||||| |||||||| || |||||||||||| ||||| |||| ||| |||||| |||||||||||||||||||||||  ||| |  ||||    
28385832 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaagggaaacaagag 28385733  T
451 tgctgtgagtgtgcatgagtgtctgagttggctcaa 486  Q
    || |||||| | ||| ||||| ||||  ||||||||    
28385732 tgatgtgagcgagcacgagtgcctgaactggctcaa 28385697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 12541183 - 12541128
Alignment:
351 aacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttctttt 406  Q
    |||||||| ||||||| |||||||| || |||||||||||| ||||| ||||||||    
12541183 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttctttt 12541128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 484
Target Start/End: Complemental strand, 13448861 - 13448728
Alignment:
351 aacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttgttcgtagaactgttcaagagaaagcagagagaggagaacagag 450  Q
    |||||||| ||||| | |||||||| || | |||||||||| ||||| ||||| || |||| | ||||| |||||||||| ||||||| ||| |  || |    
13448861 aacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgaggg 13448762  T
451 tgctgtgagtgtgcatgagtgtctgagttggctc 484  Q
    |||||||| |||||| ||| | ||||||||||||    
13448761 tgctgtgaatgtgcacgagagcctgagttggctc 13448728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 438
Target Start/End: Complemental strand, 13440725 - 13440611
Alignment:
324 ctgaacttgacggtaaatagtacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttcgtccagcttcttttgttcgtagaactgttca 423  Q
    |||||||||||||  || ||| |||| |||||||  ||||||| |||||||| || | |||||||||  ||||| ||||| || |||||| |||  ||||    
13440725 ctgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattca 13440626  T
424 agagaaagcagagag 438  Q
    |||||||||||||||    
13440625 agagaaagcagagag 13440611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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