View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5631_low_2 (Length: 369)
Name: NF5631_low_2
Description: NF5631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5631_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 30521513 - 30521168
Alignment:
| Q |
12 |
agagaataataaaaggtgtatcactatcacac--ttgatgtttcattactgggattttatcgcaaaaagccaaacaaaactgggtcagtggaccttcatc |
109 |
Q |
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| T |
30521513 |
agagaataataaaaggtgtatcactatcacacacttgatgtttcattactgggattttatcgcaaaaagccaaacaaaactgggtcagtggaccttcatc |
30521414 |
T |
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| Q |
110 |
tattctagaggtgtggggaccatttattcaacaaaataaatgttgagaaagttgttcaataaacacttcaattttacttctgatcgtgttgtaacatcgc |
209 |
Q |
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| T |
30521413 |
tattctagaggtgtgaggaccatttattcaacaaaataaatgttgagaaagttgttcaataaacacttcaatttcacttctgatcgtgttgtaacatcgc |
30521314 |
T |
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| Q |
210 |
ttctaatcgggttgtaattttcgattaaatgtttttgtatggaaaaattcactcgggtcgtaattcatgatcg--nnnnnnngtgaagtgaacaattttg |
307 |
Q |
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| T |
30521313 |
ttctaatcgggttgtaattttcaattaaatatttttgtatggaaaaattcactcgggtcgtaattcatgatcgtttttttttgtgaagtgaataattttg |
30521214 |
T |
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| Q |
308 |
agatgtttattgagcaaccatataatgttaaaagaaacgtcacata |
353 |
Q |
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| T |
30521213 |
agatgtttattgagcaaccatataattttaaaagaaacgtcacata |
30521168 |
T |
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