View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5632-Insertion-3 (Length: 1000)

Name: NF5632-Insertion-3
Description: NF5632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5632-Insertion-3
NF5632-Insertion-3
[»] chr4 (23 HSPs)
chr4 (7-980)||(51719413-51720384)
chr4 (529-650)||(24974100-24974221)
chr4 (525-650)||(12586752-12586876)
chr4 (526-642)||(45237411-45237527)
chr4 (526-650)||(55527867-55527991)
chr4 (529-650)||(36501819-36501940)
chr4 (887-966)||(628452-628532)
chr4 (526-605)||(33164504-33164583)
chr4 (528-642)||(23283737-23283851)
chr4 (529-610)||(40312788-40312869)
chr4 (529-610)||(40322864-40322945)
chr4 (525-605)||(36172164-36172244)
chr4 (526-603)||(34235705-34235782)
chr4 (526-710)||(628088-628272)
chr4 (526-602)||(28798147-28798223)
chr4 (642-710)||(40923737-40923805)
chr4 (526-581)||(28796620-28796675)
chr4 (556-603)||(33161660-33161707)
chr4 (526-589)||(47177912-47177975)
chr4 (642-700)||(628255-628313)
chr4 (534-604)||(36174579-36174649)
chr4 (526-599)||(38677667-38677740)
chr4 (525-610)||(54208179-54208264)
[»] chr1 (18 HSPs)
chr1 (526-980)||(28446158-28446608)
chr1 (595-966)||(49030302-49030669)
chr1 (526-650)||(33617644-33617768)
chr1 (526-650)||(33401408-33401532)
chr1 (526-640)||(28474792-28474906)
chr1 (526-610)||(39650196-39650280)
chr1 (526-604)||(28475982-28476060)
chr1 (526-587)||(5602944-5603005)
chr1 (526-591)||(3792296-3792361)
chr1 (526-612)||(35563364-35563446)
chr1 (525-602)||(45691050-45691127)
chr1 (592-649)||(48027051-48027108)
chr1 (526-603)||(50065478-50065555)
chr1 (525-601)||(50069237-50069313)
chr1 (526-601)||(3792560-3792635)
chr1 (553-612)||(35563532-35563591)
chr1 (525-598)||(45691196-45691269)
chr1 (525-598)||(45691338-45691411)
[»] chr3 (32 HSPs)
chr3 (526-981)||(53814187-53814639)
chr3 (526-799)||(44430418-44430689)
chr3 (526-650)||(15040681-15040805)
chr3 (642-733)||(4970742-4970833)
chr3 (526-649)||(19872096-19872219)
chr3 (532-650)||(7665739-7665857)
chr3 (532-650)||(34082845-34082963)
chr3 (526-599)||(50663875-50663948)
chr3 (606-966)||(13840365-13840722)
chr3 (887-966)||(39685544-39685624)
chr3 (526-605)||(6162681-6162760)
chr3 (587-642)||(35069249-35069304)
chr3 (526-609)||(42947375-42947458)
chr3 (526-630)||(39645774-39645878)
chr3 (526-605)||(53827660-53827739)
chr3 (640-801)||(39685307-39685466)
chr3 (526-599)||(54528961-54529034)
chr3 (899-980)||(21566660-21566743)
chr3 (526-604)||(4969875-4969953)
chr3 (764-810)||(21566861-21566907)
chr3 (586-634)||(4971184-4971232)
chr3 (527-571)||(13843626-13843670)
chr3 (525-605)||(15042005-15042085)
chr3 (526-630)||(39685212-39685316)
chr3 (526-590)||(40517537-40517601)
chr3 (890-929)||(3860615-3860654)
chr3 (526-605)||(42381615-42381694)
chr3 (525-599)||(8150168-8150242)
chr3 (552-610)||(42993592-42993650)
chr3 (526-640)||(54525802-54525916)
chr3 (554-599)||(30533883-30533928)
chr3 (526-599)||(47064864-47064937)
[»] chr5 (21 HSPs)
chr5 (532-980)||(6705675-6706107)
chr5 (525-650)||(759159-759284)
chr5 (526-650)||(28677886-28678010)
chr5 (526-650)||(11135741-11135865)
chr5 (525-642)||(34016001-34016118)
chr5 (526-598)||(17644606-17644678)
chr5 (529-650)||(5506645-5506766)
chr5 (530-605)||(30491794-30491869)
chr5 (556-650)||(30489753-30489847)
chr5 (526-604)||(34017619-34017697)
chr5 (526-599)||(6158948-6159020)
chr5 (534-609)||(19401994-19402069)
chr5 (526-599)||(17636344-17636417)
chr5 (526-605)||(6702370-6702449)
chr5 (526-605)||(33144183-33144262)
chr5 (526-605)||(40008712-40008791)
chr5 (526-599)||(1145141-1145214)
chr5 (526-587)||(6636919-6636980)
chr5 (526-599)||(7164754-7164827)
chr5 (554-599)||(7826133-7826178)
chr5 (760-805)||(39224138-39224183)
[»] chr6 (16 HSPs)
chr6 (526-825)||(17436322-17436619)
chr6 (526-640)||(32274184-32274298)
chr6 (760-966)||(25403648-25403853)
chr6 (526-610)||(14153354-14153438)
chr6 (564-635)||(31483681-31483752)
chr6 (898-980)||(17436243-17436327)
chr6 (526-605)||(35060894-35060973)
chr6 (526-660)||(12703815-12703948)
chr6 (526-607)||(31522532-31522613)
chr6 (525-666)||(24326943-24327084)
chr6 (527-607)||(4321735-4321815)
chr6 (543-630)||(4319101-4319188)
chr6 (526-599)||(806545-806618)
chr6 (642-710)||(25403901-25403969)
chr6 (760-802)||(24359144-24359185)
chr6 (542-599)||(7203956-7204013)
[»] chr2 (19 HSPs)
chr2 (525-639)||(8273244-8273358)
chr2 (526-604)||(12967270-12967349)
chr2 (525-591)||(22787998-22788064)
chr2 (760-966)||(942885-943090)
chr2 (526-615)||(22727662-22727751)
chr2 (760-813)||(24929087-24929140)
chr2 (529-609)||(11712961-11713041)
chr2 (530-710)||(25678782-25678962)
chr2 (595-710)||(943138-943252)
chr2 (526-605)||(11573633-11573712)
chr2 (526-605)||(18387241-18387320)
chr2 (526-581)||(25389873-25389928)
chr2 (526-571)||(20685006-20685051)
chr2 (526-599)||(37893013-37893086)
chr2 (847-926)||(24928982-24929059)
chr2 (887-926)||(25678596-25678635)
chr2 (642-700)||(24929186-24929244)
chr2 (767-813)||(25678695-25678741)
chr2 (525-610)||(2154261-2154346)
[»] chr7 (19 HSPs)
chr7 (529-650)||(5126-5247)
chr7 (525-642)||(19365357-19365474)
chr7 (530-647)||(38386178-38386295)
chr7 (526-662)||(5061671-5061806)
chr7 (887-966)||(41798906-41798986)
chr7 (887-966)||(44552418-44552498)
chr7 (526-689)||(44552026-44552189)
chr7 (526-587)||(28138759-28138820)
chr7 (526-603)||(38790884-38790962)
chr7 (526-599)||(26009369-26009442)
chr7 (529-650)||(38047649-38047770)
chr7 (526-606)||(31823589-31823669)
chr7 (526-572)||(33839474-33839520)
chr7 (764-802)||(41798791-41798829)
chr7 (526-599)||(26011958-26012031)
chr7 (760-813)||(44552309-44552362)
chr7 (526-610)||(1537240-1537324)
chr7 (525-605)||(44552701-44552781)
chr7 (526-587)||(28139452-28139513)
[»] chr8 (11 HSPs)
chr8 (526-650)||(5967191-5967315)
chr8 (526-650)||(34279515-34279639)
chr8 (526-742)||(9418587-9418803)
chr8 (760-966)||(9387520-9387725)
chr8 (526-642)||(31762241-31762357)
chr8 (526-609)||(33220782-33220865)
chr8 (595-710)||(9387824-9387939)
chr8 (526-587)||(3588562-3588623)
chr8 (526-599)||(43640978-43641051)
chr8 (642-710)||(9387773-9387841)
chr8 (526-588)||(3588340-3588402)
[»] scaffold0246 (3 HSPs)
scaffold0246 (846-966)||(2468-2587)
scaffold0246 (526-710)||(2747-2931)
scaffold0246 (760-802)||(2625-2667)
[»] scaffold0041 (2 HSPs)
scaffold0041 (888-966)||(23829-23908)
scaffold0041 (526-813)||(23487-23772)
[»] scaffold1063 (1 HSPs)
scaffold1063 (526-607)||(1475-1556)


Alignment Details
Target: chr4 (Bit Score: 717; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 7 - 980
Target Start/End: Complemental strand, 51720384 - 51719413
Alignment:
Q  7 acaaacaaacagtaatgctgatatattgtagcaacttgtatattgtgaataaagtaccttggcaaaaatgaaacctcttttgaatgaagaaggtggagaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51720384 acaaacaaacagtaatgctgatatattgtagcaacttgtatattgtgaataaagtaccttggcaaaaatgaaacctcttttgaatgaagaaggtggagaa 51720285  T
Q  107 gaagtggttttggaaatggaagaatgagatagcttgagtccaaaaaattgagaattgaatggagctgaagtaagtgatgttgatatgttttgagggtgaa 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51720284 gaagtggttttggaaatggaagaatgagatagcttgaggccaaaaaattgagaattgaatggagctgaagtaagtgatgttgatatgttttgagggtgaa 51720185  T
Q  207 taaatgtggggaaagaattggttgggagagtgagggaagccttagccatggatgaggaagaacaaagtgataacatgttgtgttg-----tgttttcttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||    
T  51720184 taaatgtggggaaagaattggttgggagagtgagggaagccttagccatggatgaggaagaacaaagtgataacatgttgtgttgtgttgtgttttcttt 51720085  T
Q  302 tccttatggggtggtagatagagatagatagattatgatatgagggagggaaagtgtatacattgggttgagtgggtggatgaaatcagtgaagccagcg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51720084 tccttatggggtggtagatagagatagatagattatgatatgagggagggaaagtgtatacattgggttgagtgggtggatgaaatcagtgaagccagcg 51719985  T
Q  402 agacaggattggcttttctggcgtggcctaattctcaccccaactctacctacctagtaattaagttctaactctttctaccaaacttaactta------ 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  51719984 agacaggattggcttttctggcgtggcctaattctcaccccaactctacctacctagtaattaagttctaactctttctaccaaacttaacttagcccca 51719885  T
Q  496 --atgctcgatgtagagagagatatgtcaccggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtat 593  Q
      ||||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| |||  |||||||||||||| |||||||||||||||     
T  51719884 agatgctcgatgtagagagagatatctcacccgaattctgcttattacccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaa 51719785  T
Q  594 gttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagt 693  Q
    |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51719784 gttaacatgcgttaatgtaaattacaacgtaacgtaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgcgt 51719685  T
Q  694 gacttaaaccacgctaggcataaaacaggtacaaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtg 793  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||||||||||| | ||||||||||||||  ||    
T  51719684 gacttaaaccacgctaggcataaaactggtacaaagcaagcaccaaaacagaatttaactagcg--tgagttaagtcacaccagttttaacactagcatg 51719587  T
Q  794 agttaactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgttta 893  Q
    ||||||||| | |||||||||||| ||||||| ||||||||||           ||| ||||||||   ||| |||||||||||||| | |  || ||||    
T  51719586 agttaactcacattggtgctgatgctatatgcacagcagactt-----------gca-tggcagta---gcttctgccttgttccatctatccctcttta 51719502  T
Q  894 gtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagag-acatgcagtcattca 980  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | || |||||||||||||| |||||||||||||||    
T  51719501 gtgaatatgcaatcattcaataataattttggtacaaccattcattggttcatcctgaactcataatttagagaacatgcagtcattca 51719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 529 - 650
Target Start/End: Complemental strand, 24974221 - 24974100
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 628  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||| || |||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataatgtaactt 24974122  T
Q  629 aacatatgttgcgtgacttaac 650  Q
    || ||| || ||||||||||||    
T  24974121 aagataagtagcgtgacttaac 24974100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 525 - 650
Target Start/End: Complemental strand, 12586876 - 12586752
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    ||||||| ||||||||| |||||| |||||||||||  |||| ||||| ||| ||||  ||||||| ||||||||||||| |||||||||||| ||||||    
T  12586876 ggaattcagctcattactcaaatggattcgctcatttccaaa-taaatgaccgaaatgtccctacgcatgttaacatgcgctagtgcaaattataacgta 12586778  T
Q  625 acttaacatatgttgcgtgacttaac 650  Q
    |||||| ||| || ||||||||||||    
T  12586777 acttaagataagtagcgtgacttaac 12586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 526 - 642
Target Start/End: Original strand, 45237411 - 45237527
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||| |||||| ||||||| |||   ||||||||||||  |||| |||||| | ||||||||||||| |||||||||||| |||||||    
T  45237411 gaattctgctcattactcaaatggattcgcttatttctaaagtaaataactgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgtaa 45237510  T
Q  626 cttaacatatgttgcgt 642  Q
    ||||| ||| |||||||    
T  45237511 cttaagatacgttgcgt 45237527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 526 - 650
Target Start/End: Complemental strand, 55527991 - 55527867
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||   ||||| |||||||||||  ||||| |||| ||| |||| |||||||| ||||||||| ||| |||||||||||| |||||||    
T  55527991 gaattctgctcattatttaaatggattcgctcatttccaaagcaaatgaccgaaatgcccctacgcatgttaacacgcgctagtgcaaattataacgtaa 55527892  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || ||||||||||||    
T  55527891 cttaagataagtagcgtgacttaac 55527867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 529 - 650
Target Start/End: Complemental strand, 36501940 - 36501819
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 628  Q
    |||||||||||||||| ||| |||||||||||| |||||||||| | | |||| |||||||| ||||| ||||||| | |||||||||| |||||||||     
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcgctggtgcaaattataacgtaactc 36501841  T
Q  629 aacatatgttgcgtgacttaac 650  Q
    || ||| ||  |||||||||||    
T  36501840 aagataagtaacgtgacttaac 36501819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 887 - 966
Target Start/End: Original strand, 628452 - 628532
Alignment:
Q  887 ctgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||  |||| |||||||||||||||    
T  628452 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaactcataatttagaga 628532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 33164583 - 33164504
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 33164504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 528 - 642
Target Start/End: Complemental strand, 23283851 - 23283737
Alignment:
Q  528 attctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaact 627  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||| | | |||| | | || | ||||||||||| | |||||||||||||||| |||||    
T  23283851 attctacttattacctaaatgaattcgctcattttcaaagtaaatgatcgaaatgctcttatgcatgttaacatgtgctagtgcaaattacaacataact 23283752  T
Q  628 taacatatgttgcgt 642  Q
    ||| ||| |||||||    
T  23283751 taagatacgttgcgt 23283737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 610
Target Start/End: Complemental strand, 40312869 - 40312788
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    ||||||||||||||||||||| ||||||||||  |||||||||   | ||||||| | |||||||||||||||||| |||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtg 40312788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 610
Target Start/End: Complemental strand, 40322945 - 40322864
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    ||||||||||||||||||||| ||||||||||  |||||||||   | ||||||| | |||||||||||||||||| |||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtg 40322864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 525 - 605
Target Start/End: Original strand, 36172164 - 36172244
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||||   | | ||||||| |||||||||   |||||||||||||| ||||||||||||||||    
T  36172164 ggaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaacatgcgt 36172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 34235782 - 34235705
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 603  Q
    ||||| |||||||||||||||||  | |||||||||  ||||||||| ||| |||| ||| |||| ||||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgc 34235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 710
Target Start/End: Original strand, 628088 - 628272
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||  ||     ||||| |||| |  |||||||||| |||| ||||||  || || |    
T  628088 gaattctgctcattacccaaatggtttcgctcattcctaaagtaaaagacttttttacccttacgcaacttaacatgcgctagttcaaattggaatgtga 628187  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    ||||| | | || | ||||||||| | ||| |||| ||| ||| ||| ||||||||||||||||   ||||||||  ||||||||    
T  628188 cttaagacaggtagagtgacttaagtaacgctagtgcaatatgaaacacaacttaagtcacgttacttgacttaagtcacgctag 628272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 602
Target Start/End: Complemental strand, 28798223 - 28798147
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatg 602  Q
    |||||||||||||||||||||     |||||||||||||||||||||  ||||||| ||||| |  |||||||||||    
T  28798223 gaattctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaacatg 28798147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 642 - 710
Target Start/End: Complemental strand, 40923805 - 40923737
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    |||||||| ||||| |||| |||||| |||||||| |||||||||||||  ||||||||  ||||||||    
T  40923805 tgacttaaatcacgctagtgcaaaatttaacgcaatttaagtcacgttgcttgacttaagtcacgctag 40923737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 28796620 - 28796675
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaat 581  Q
    |||||||||||||||||||||  |  |||||||||||||||||||||  |||||||    
T  28796620 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaat 28796675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 33161660 - 33161707
Alignment:
Q  556 tcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 603  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||    
T  33161660 tcattcccaaagtaaatatccaaaatacccctgcatatgttaacatgc 33161707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 589
Target Start/End: Original strand, 47177912 - 47177975
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctac 589  Q
    ||||||||||| | ||||||| |  ||||||| ||| |||||||||| ||||||||||||||||    
T  47177912 gaattctgctcttgacccaaacggtttcgctcgttcccaaagtaaattaccaaaatacccctac 47177975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 700
Target Start/End: Original strand, 628255 - 628313
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaa 700  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||    
T  628255 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaa 628313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 534 - 604
Target Start/End: Complemental strand, 36174649 - 36174579
Alignment:
Q  534 ctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 604  Q
    |||||||| ||||||  ||| ||||||| ||||||||| | ||||||| || ||||| |||||||||||||    
T  36174649 ctcattactcaaatggtttcactcattcccaaagtaaaaatccaaaatgccactacgcatgttaacatgcg 36174579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 38677740 - 38677667
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| ||||||||| || || | |||||| |||||||||||  ||||||| |||| || ||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaac 38677667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 610
Target Start/End: Original strand, 54208179 - 54208264
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    |||||| ||||| ||| |||||||  || |||||||| |||||||||| | ||||||||||||||  | |||||| | ||||||||    
T  54208179 ggaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgttagtg 54208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-139; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 526 - 980
Target Start/End: Complemental strand, 28446608 - 28446158
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||| ||  |||| |||||||| ||||||||||||| |||| ||| |||||||||||    
T  28446608 gaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtacaa-ttacaacgtaa 28446510  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||  || ||||||||||||| ||||| |||||||| || ||    
T  28446509 cttaacacacgttgcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacactgcgtgacttaaaccatgctagacataaaactggaac 28446410  T
Q  726 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgc 825  Q
    |||||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  28446409 aaagcaagtaccaaaacagaatttgagtagcg--tgagttaagtcacgctagttttaacactagcgtgagttaactcgcgttggtgttgatgctatatgc 28446312  T
Q  826 gcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttgg 925  Q
    ||| ||||||| | || || ||||||||||| ||   |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||||    
T  28446311 gcatcagacttgcatggcaatggcagtggcaata---gctgctgccttgttccatctgtccctgtttagtgaatatgcaatcattcaataataatattgg 28446215  T
Q  926 tac-accattcattgattcattcagatctcataatttagaga-catgcagtcattca 980  Q
    ||| |||||| |||||||||| |||| ||||||||||||||| ||||||||||||||    
T  28446214 tacaaccattgattgattcatccagaactcataatttagagatcatgcagtcattca 28446158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 595 - 966
Target Start/End: Original strand, 49030302 - 49030669
Alignment:
Q  595 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 694  Q
    |||||| ||| |||||||||||  ||||| |||||| | | || || |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||    
T  49030302 ttaacacgcgctagtgcaaattggaacgtgacttaagacaggtagcctgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttg 49030401  T
Q  695 acttaaaccacgctaggcataaaacaggtacaaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtga 794  Q
    ||||||  ||||||||  ||    | ||||||||||| |||||||||       | | ||||||  ||||||||||||||||||||||||||||  ||||    
T  49030402 acttaagtcacgctagttatgtctctggtacaaagcatgcaccaaaaacttcaatgagtagcgt--gagttaagtcacgctagttttaacactac-gtga 49030498  T
Q  795 gttaactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttag 894  Q
    |||||||| ||||||||||  || |||   ||| ||||||     || |||||||| ||||||||||||||||  | ||||||| |   || || |||||    
T  49030499 gttaactcacgttggtgcttctgctatgcacgctgcagaccagactggcagtggcaatggcagtagctgctgc--ctttgttccttcatttcctatttag 49030596  T
Q  895 tgaatatgcaatcattcaataataattttggtaca-ccattcattgattcattcagatctcataatttagaga 966  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||    
T  49030597 tgaacatgcaattattcaataataattttggtacagccattcattgattcaaccagaactcataatttagaga 49030669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 526 - 650
Target Start/End: Original strand, 33617644 - 33617768
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||| | ||||||||||||| |||||||||||| |||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcgctagtgcaaattataacgtaa 33617743  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || ||||||||||||    
T  33617744 cttaagataagtagcgtgacttaac 33617768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 526 - 650
Target Start/End: Original strand, 33401408 - 33401532
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| |||||||||  |||||| ||||||||||||||||||||||| ||| |||| ||| || | ||||||||||||| |||||||||||| |||||||    
T  33401408 gaattttgctcattagtcaaatggattcgctcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgtaa 33401507  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || ||||||||||||    
T  33401508 cttaagataagtagcgtgacttaac 33401532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 526 - 640
Target Start/End: Original strand, 28474792 - 28474906
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||| ||||||| |||| ||||| ||  |||| |||||||| ||||||||||||  || |||||||||||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgcactactgcaaattacaacgtaa 28474891  T
Q  626 cttaacatatgttgc 640  Q
    ||||| ||| |||||    
T  28474892 cttaagatacgttgc 28474906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 526 - 610
Target Start/End: Original strand, 39650196 - 39650280
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    ||||||||||||||||| |||||  |||||||||||  |||||||||  ||||||| |||||||| ||||||||||||| |||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgctagtg 39650280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 526 - 604
Target Start/End: Complemental strand, 28476060 - 28475982
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 604  Q
    |||||||||||||||||||||||  | |||||||||||||||||||| | | |||| |||||||  |||||||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgcg 28475982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 5602944 - 5603005
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 587  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccct 5603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 591
Target Start/End: Original strand, 3792296 - 3792361
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgt 591  Q
    |||||||||||||||||||||||| |   |||||||||||| |||||  ||||||||||| |||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaatacccttacgt 3792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 612
Target Start/End: Original strand, 35563364 - 35563446
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgca 612  Q
    |||||||||||||||    |||| |||||||||||| |||||||||| ||  |||| ||||| || ||||||||||||| |||||||    
T  35563364 gaattctgctcatta----aatggattcgctcattcccaaagtaaatgactgaaatgcccctgcgcatgttaacatgcgctagtgca 35563446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 45691127 - 45691050
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatg 602  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||||||    
T  45691127 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatg 45691050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 649
Target Start/End: Complemental strand, 48027108 - 48027051
Alignment:
Q  592 atgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaa 649  Q
    ||||||| |||||||||||||||||| ||||||| |||| ||| || |||||||||||    
T  48027108 atgttaatatgcgttagtgcaaattataacgtaatttaagataagtagcgtgacttaa 48027051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 50065478 - 50065555
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgc 603  Q
    ||||||| ||||||||| ||||| | |||||||||| |||||||||| ||| |||| || || || ||||||||||||    
T  50065478 gaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaacatgc 50065555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 601
Target Start/End: Complemental strand, 50069313 - 50069237
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacat 601  Q
    ||||||||||||||||||||||     |||||||||| ||||||||||  ||||||| ||||| || ||||||||||    
T  50069313 ggaattctgctcattacccaaacagcatcgctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaacat 50069237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 601
Target Start/End: Original strand, 3792560 - 3792635
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacat 601  Q
    ||||||||||||||||||||||   ||||||||||  |||||||||   ||||||| ||| |||| ||||||||||    
T  3792560 gaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaacat 3792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 612
Target Start/End: Original strand, 35563532 - 35563591
Alignment:
Q  553 cgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgca 612  Q
    ||||||||| |||||||||| ||  |||| |||||||| ||||||||||||| |||||||    
T  35563532 cgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgca 35563591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 598
Target Start/End: Complemental strand, 45691269 - 45691196
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 598  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||    
T  45691269 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 598
Target Start/End: Complemental strand, 45691411 - 45691338
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 598  Q
    |||||| |||||||||| ||||||  ||||||||||| |||||||||   ||||||| |||||||  |||||||    
T  45691411 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 526 - 981
Target Start/End: Complemental strand, 53814639 - 53814187
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| | |||||| |||||||| ||||||| ||||| |||||||||||| |||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcgctagtgcaaattaaaacgtaa 53814540  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||||||| ||| |||||||||||||||  | |||||||||| ||||||||||||||||||||  |||||||||||||||||||    ||||| | |||    
T  53814539 cttaacatacgttacgtgacttaactcacactggtacaaaatggaacgcaacttaagtcacgttacgtgacttaaaccacgctagtaccaaaactgatac 53814440  T
Q  726 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgc 825  Q
    |||||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||||    
T  53814439 aaagcaagtaccaaaacagaatttgagtagcg--tgagttaagtcacgctagttttaacactaacgtgagttaactcacgttggtgctgatgctatatgc 53814342  T
Q  826 gcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttgg 925  Q
    ||| |||| || | || |||||| ||||||||||   ||| |||||||||| ||| |||  ||||||||||||||||||| |||||||||||||||||||    
T  53814341 gcatcagatttgcatggcagtggtagtggcagta---gctactgccttgtttcatctgtccctgtttagtgaatatgcaaccattcaataataattttgg 53814245  T
Q  926 tac-accattcattgattcattcagatctcataatttagaga-catgcagtcattcat 981  Q
    ||| |||||||||||||| || |||| ||||||||||||||| ||||||| |||||||    
T  53814244 tacaaccattcattgattaatccagaactcataatttagagatcatgcagccattcat 53814187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 526 - 799
Target Start/End: Original strand, 44430418 - 44430689
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||| |||||||  || |||||||| |||||||||  | ||   ||||| |||| |  |||||||||| |||||||||||  ||||| |    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaaagatcattttacccttacgcaacttaacatgcgctagtgcaaattggaacgtga 44430517  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||| | | || ||| ||||||| ||||| |||| ||||||| || |||||||||||||||||   ||||||||  ||||||||   | || | |||||    
T  44430518 cttaagacaggtagcgcgacttaagtcacgctagtgcaaaatgaaatgcaacttaagtcacgttacttgacttaagtcacgctagttttgaatctggtac 44430617  T
Q  726 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaa 799  Q
    |||||| ||||||||||  |   | | |||||  ||||||||||||||||||||||||||||||||||||||||    
T  44430618 aaagcatgcaccaaaacctacaatgagtagcg--tgagttaagtcacgctagttttaacactagtgtgagttaa 44430689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 526 - 650
Target Start/End: Original strand, 15040681 - 15040805
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||  |||| |||||||| ||||||||||||  |||||||||||| ||||||     
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcactagtgcaaattataacgtag 15040780  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| |||  | ||||||||||||    
T  15040781 cttaagataaatagcgtgacttaac 15040805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 642 - 733
Target Start/End: Complemental strand, 4970833 - 4970742
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagcaag 733  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  4970833 tgacttaactcacgctagtacaaaatgtaaagcaatttaagccacgttgcgtgacttaaaccacgctaggcatgaaactggtacaaagcaag 4970742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 526 - 649
Target Start/End: Complemental strand, 19872219 - 19872096
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||| ||||||| ||||||||||||||||||  ||| ||||| || ||||| || ||||| ||||||||||||||||||||||| || |||||||    
T  19872219 gaattctgcccattacctaaatgaattcgctcattcctaaaataaatgactaaaatgcctctacgcatgttaacatgcgttagtgcaaactataacgtaa 19872120  T
Q  626 cttaacatatgttgcgtgacttaa 649  Q
    ||||| ||| || |||||||||||    
T  19872119 cttaagataagtagcgtgacttaa 19872096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 532 - 650
Target Start/End: Original strand, 7665739 - 7665857
Alignment:
Q  532 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 631  Q
    |||||||| |||||||| |||||||||||| |||||||||| ||| |||| ||| || | ||||||||||||| |||||||||||| ||||||||||||     
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcgctagtgcaaattataacgtaacttaag 7665838  T
Q  632 atatgttgcgtgacttaac 650  Q
    ||| || ||||||||||||    
T  7665839 ataagtagcgtgacttaac 7665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 532 - 650
Target Start/End: Original strand, 34082845 - 34082963
Alignment:
Q  532 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 631  Q
    |||||||| ||||||||||||||||||||  |||||||||| | |||||| | |||||| ||||||||||||| | || ||||||| ||| ||||||||     
T  34082845 tgctcattgcccaaatgaattcgctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaacatgcgctggtacaaattataacataacttaag 34082944  T
Q  632 atatgttgcgtgacttaac 650  Q
    ||| || ||||||||||||    
T  34082945 ataagtagcgtgacttaac 34082963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 50663875 - 50663948
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| | |||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaac 50663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 606 - 966
Target Start/End: Complemental strand, 13840722 - 13840365
Alignment:
Q  606 tagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccac 705  Q
    |||||| ||||  ||||| |||||| | | || ||||||||||| ||||| |||| ||||||| |||| ||||||| |||||||   ||||||||  |||    
T  13840722 tagtgccaattggaacgtgacttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgaaacgtaacttaaatcacgttacttgacttaagtcac 13840623  T
Q  706 gctaggcataaaacaggtacaaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcg 805  Q
    |||||   | || | |||| |||||| ||||||||||  |   | |  |||||  ||||||||||||||||||||||| ||||| | |||||||||| ||    
T  13840622 gctagttctgaatctggtataaagcatgcaccaaaacctacaatgagcagcgt--gagttaagtcacgctagttttaagactagcgggagttaactcacg 13840525  T
Q  806 ttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaa 905  Q
     || ||||  || |||   ||| ||||||     || || |||||||||||||||||| |||  | ||||||| |   |  |||||||||||| ||||||    
T  13840524 ctgatgcttctgctatgcacgctgcagaccagactggcaatggcagtggcagtagctgttgc--ctttgttccttcattccctgtttagtgaacatgcaa 13840427  T
Q  906 tcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    | |||| |||||||||||| ||| | ||||||||||||||  |||| |||||||||||||||    
T  13840426 ttattcgataataattttgatacaatcattcattgattcaaccagaactcataatttagaga 13840365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 887 - 966
Target Start/End: Original strand, 39685544 - 39685624
Alignment:
Q  887 ctgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    |||||||||||| ||||||| |||| ||||||||||| |||| ||||||||||||||||  |||| |||||||||||||||    
T  39685544 ctgtttagtgaacatgcaattattcgataataatttttgtacaaccattcattgattcaaccagaactcataatttagaga 39685624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 6162760 - 6162681
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||   ||||||| |||||||| ||||||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 6162681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 587 - 642
Target Start/End: Complemental strand, 35069304 - 35069249
Alignment:
Q  587 tacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgt 642  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  35069304 tacgtatgttaacatgcgctagtgcaaattacaacgtaacttaagatacgttgcgt 35069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 609
Target Start/End: Original strand, 42947375 - 42947458
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 609  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||   ||||||| | |||||| ||||||||||||| ||||    
T  42947375 gaattctgctcattacctaaatgatttcactcattctcaaagtaaaagtccaaaatgctcctacgcatgttaacatgcgctagt 42947458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 630
Target Start/End: Original strand, 39645774 - 39645878
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||| |||||||| | ||||| ||||| |||||| |||||||||| | | ||||   |||||| ||||||||||||| |||||||||||| || ||||    
T  39645774 gaattccgctcattatctaaatggattcgttcattcgcaaagtaaatgatcgaaatgttcctacgcatgttaacatgcgctagtgcaaattataatgtaa 39645873  T
Q  626 cttaa 630  Q
    |||||    
T  39645874 cttaa 39645878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 53827739 - 53827660
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    ||||||||||||||||| ||||    |||||||||| ||||||||||  ||||||| |||||||| ||||||||||||||    
T  53827739 gaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 53827660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 640 - 801
Target Start/End: Original strand, 39685307 - 39685466
Alignment:
Q  640 cgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagcaagcaccaa 739  Q
    |||||||||| ||||| | || ||||||| |||| |||||||||||||||   ||||||||  ||||||||   | || | |||| |||||| |||||||    
T  39685307 cgtgacttaagtcacgctggtgcaaaatgaaacgaaacttaagtcacgttacttgacttaagtcacgctagttctgaatctggtagaaagcatgcaccaa 39685406  T
Q  740 aacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaact 801  Q
    |||  |   | |  |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  39685407 aacctacaatgaacagcgt--gagttaagtcacgctagttttaacactagggtgagttaact 39685466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 54529034 - 54528961
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| ||||| |||||| || |||||||||||| ||||||  |||||||||||||||  ||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaac 54528961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 899 - 980
Target Start/End: Complemental strand, 21566743 - 21566660
Alignment:
Q  899 tatgcaatcattcaataataattttggtaca-ccattcattgattcattcagatctcataatttagag-acatgcagtcattca 980  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||||  || | |||||||||||||| ||||||| |||||||    
T  21566743 tatgcattcattcaataataattcaggtacaaccattcattgattcaaccaaaactcataatttagagaacatgcattcattca 21566660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 604
Target Start/End: Original strand, 4969875 - 4969953
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 604  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||   | |||||||||||||||  |||||| ||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagttaacttgcg 4969953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 764 - 810
Target Start/End: Complemental strand, 21566907 - 21566861
Alignment:
Q  764 ttaagtcacgctagttttaacactagtgtgagttaactcgcgttggt 810  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||||    
T  21566907 ttaagtcacgctagtgttaacactagcgtgagttaactcacgttggt 21566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 586 - 634
Target Start/End: Complemental strand, 4971232 - 4971184
Alignment:
Q  586 ctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacata 634  Q
    ||||| ||||||||||||  ||||||||||||||| |||||||||||||    
T  4971232 ctacgcatgttaacatgcactagtgcaaattacaaagtaacttaacata 4971184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 527 - 571
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  527 aattctgctcattacccaaatgaattcgctcattctcaaagtaaa 571  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 15042085 - 15042005
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    ||||||||||||||||||||||  |  |||||||||| |||||||||   | ||||| |||||||| |||||||| |||||    
T  15042085 ggaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgt 15042005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 630
Target Start/End: Original strand, 39685212 - 39685316
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| |||||||||||||||||  |||||||||| ||||||||||  ||||   ||||| |||| |  |||||| ||| |||||||||||  ||||| |    
T  39685212 gaattttgctcattacccaaatggtttcgctcattttcaaagtaaaagaccattttacccttacgcaacttaacacgcgctagtgcaaattggaacgtga 39685311  T
Q  626 cttaa 630  Q
    |||||    
T  39685312 cttaa 39685316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 590
Target Start/End: Complemental strand, 40517601 - 40517537
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacg 590  Q
    ||||||||||| ||||||||| |  |||||||||||  ||||||||| ||||| |||||||||||    
T  40517601 gaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaagatacccctacg 40517537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 890 - 929
Target Start/End: Original strand, 3860615 - 3860654
Alignment:
Q  890 tttagtgaatatgcaatcattcaataataattttggtaca 929  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  3860615 tttagtgaacatgcaattattcaataataattttggtaca 3860654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 42381615 - 42381694
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    ||||||||||||||||| |||  |  |||||||||  ||||||||||  ||||||| ||| |||| ||||||||||||||    
T  42381615 gaattctgctcattacctaaacaacatcgctcatttccaaagtaaatgtccaaaatgcccttacgcatgttaacatgcgt 42381694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 525 - 599
Target Start/End: Original strand, 8150168 - 8150242
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    |||||| || || ||||||||| |  || |||||||| ||||| || | ||||||||||||||||||||||||||    
T  8150168 ggaattatgatctttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaac 8150242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 42993592 - 42993650
Alignment:
Q  552 tcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    |||||||||| ||||||||||  || |||| ||||| |||||||||||||||| |||||    
T  42993592 tcgctcattcccaaagtaaatttcctaaatgcccctgcgtatgttaacatgcgctagtg 42993650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 526 - 640
Target Start/End: Original strand, 54525802 - 54525916
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| ||||| ||||| ||||  |||||||||||  |||||||||| ||  ||||| ||||| |||| |||||   || |||||||||||| || ||||    
T  54525802 gaattatgctctttacctaaattgattcgctcatttccaaagtaaatgactgaaatatccctatgtatattaactcacgctagtgcaaattataatgtaa 54525901  T
Q  626 cttaacatatgttgc 640  Q
     |||||||| |||||    
T  54525902 gttaacatacgttgc 54525916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 554 - 599
Target Start/End: Complemental strand, 30533928 - 30533883
Alignment:
Q  554 gctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||| |||||||||||| |||||||||||||||  ||||||||    
T  30533928 gctcattttcaaagtaaatatccaaaatacccctacacatgttaac 30533883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 47064864 - 47064937
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||| |||||||||||||||||| |  |||||||| |||||||||   ||||||| | |||||| ||||||||    
T  47064864 gaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaac 47064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 210; Significance: 1e-114; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 532 - 980
Target Start/End: Complemental strand, 6706107 - 6705675
Alignment:
Q  532 tgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaac 631  Q
    ||||||||| ||||||| |||||||||||  |||||||||| ||  |||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtatcttaac 6706008  T
Q  632 atatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtacaaagca 731  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  ||            
T  6706007 atatgttgcgtgacttaactcacgctagtacaaaatgttacgcaacttaagccacgttgtgtgacttaaaccacgctaggcataaaactagt-------- 6705916  T
Q  732 agcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgcgcagca 831  Q
            |||||||||| | |||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||| ||    
T  6705915 -----tttaacagaatttgagtagcg--tgagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtgttgaagctatatgcgcaaca 6705823  T
Q  832 gacttacgtgacagtggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtac-ac 930  Q
    || |  | || |||||||||||||||||   |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  6705822 gaatagcatggcagtggcagtggcagta---gctgctgccttgttccatctgtccctgtttagtgaatatgcaatcattcaataataattttggtacaac 6705726  T
Q  931 cattcattgattcattcagatctcataatttagaga-catgcagtcattca 980  Q
    ||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  6705725 cattcattgattcatccataactcataatttagagatcatgcagtcattca 6705675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 525 - 650
Target Start/End: Original strand, 759159 - 759284
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    |||||||||||||||||| ||||| ||||| |||||| |||||||||| ||| |||| | | |||| ||||||||||| ||||||| |||||||||||||    
T  759159 ggaattctgctcattacctaaatggattcgatcattcccaaagtaaatgaccgaaatgctcatacgcatgttaacatgtgttagtgtaaattacaacgta 759258  T
Q  625 acttaacatatgttgcgtgacttaac 650  Q
    |||||| |||||||| ||||||||||    
T  759259 acttaagatatgttgtgtgacttaac 759284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 526 - 650
Target Start/End: Original strand, 28677886 - 28678010
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||| ||||||| | ||||||||||  ||||||||| ||| ||||||||||||||| ||||||||||| || || |||||| |||||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatgcgctactgaaaattataacgtaa 28677985  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || ||||||||||||    
T  28677986 cttaaaataagtagcgtgacttaac 28678010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 526 - 650
Target Start/End: Original strand, 11135741 - 11135865
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| ||||| |||||||||||| ||||||||||  |||| ||||| ||||||||||||||||| |||||||| | || |||||||||| |||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgctagtgcaaatgacaacgtaa 11135840  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
     |||||| | ||||||||| |||||    
T  11135841 gttaacacacgttgcgtgagttaac 11135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 525 - 642
Target Start/End: Original strand, 34016001 - 34016118
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||| ||  |||| |||||||  ||||||||||||  |||||  ||||||||||||    
T  34016001 ggaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgcactagtgggaattacaacgta 34016100  T
Q  625 acttaacatatgttgcgt 642  Q
    |||||| ||| |||||||    
T  34016101 acttaagatacgttgcgt 34016118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 526 - 598
Target Start/End: Complemental strand, 17644678 - 17644606
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaa 598  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaa 17644606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 650
Target Start/End: Complemental strand, 5506766 - 5506645
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 628  Q
    ||||||||||||  ||| || |||| ||||||| |||||||||| | | |||| | |||||| ||||| |||||||  ||||||||||| ||| ||||||    
T  5506766 ttctgctcattattcaactggattcactcattcccaaagtaaatgatcgaaatgctcctacgcatgttgacatgcgccagtgcaaattataacataactt 5506667  T
Q  629 aacatatgttgcgtgacttaac 650  Q
    || ||| || ||||||||||||    
T  5506666 aagataagtagcgtgacttaac 5506645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 530 - 605
Target Start/End: Complemental strand, 30491869 - 30491794
Alignment:
Q  530 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||||||||||||| |||||||||   | |||||  ||||||| |||||||| |||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaacttgcgt 30491794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 556 - 650
Target Start/End: Original strand, 30489753 - 30489847
Alignment:
Q  556 tcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaac 650  Q
    |||||| |||||||||   | ||||| |||||||| ||||||||||||  ||||||| |||| |||||||||||| ||| || ||||||||||||    
T  30489753 tcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacatgctctagtgcagattataacgtaacttaaaataagtagcgtgacttaac 30489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 526 - 604
Target Start/End: Complemental strand, 34017697 - 34017619
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcg 604  Q
    |||||||||||||||| ||||||  | |||||||| ||||||||||| ||| ||||||||||||| | || ||||||||    
T  34017697 gaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgcg 34017619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 6159020 - 6158948
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||||||  | |||||| ||||||||||||||||    
T  6159020 gaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaata-ccctacgtatgttaac 6158948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 534 - 609
Target Start/End: Complemental strand, 19402069 - 19401994
Alignment:
Q  534 ctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 609  Q
    |||||||||||||||  ||| |||||||||||||||||   ||||||| ||| |||| ||||||||||||| ||||    
T  19402069 ctcattacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcgctagt 19401994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 17636344 - 17636417
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||||||||| ||||| |||||||||||| |||| ||||| |   ||||||||||||  ||||||||    
T  17636344 gaattctgctcattacctaaatggattcgctcattcccaaaataaatgattgaaatacccctacacatgttaac 17636417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 6702370 - 6702449
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||| |||||||   |||||||||||||||||||||   | ||||| ||| |||| |||||||| |||||    
T  6702370 gaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaacttgcgt 6702449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 33144262 - 33144183
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||| ||||||||||||  |  ||||||||||  ||||||||| ||| |||| |||||||| |||||||| |||||    
T  33144262 gaattctgttcattacccaaacaatatcgctcattcctaaagtaaatgaccgaaatgcccctacgcatgttaacttgcgt 33144183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 40008712 - 40008791
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    ||||||||||||||||| |||     |||||||||||||||||||||  | ||||| ||||| || ||||||||||||||    
T  40008712 gaattctgctcattacctaaacattatcgctcattctcaaagtaaatgtctaaaatgcccctgcgcatgttaacatgcgt 40008791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 1145141 - 1145214
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||| ||||||||| |||||    ||||||||||| |||||||||| |||||||| || ||||| ||||||||    
T  1145141 gaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaac 1145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 6636980 - 6636919
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 587  Q
    ||||||||||||||| ||||||||||  | |||||| |||| ||||| ||||||||| ||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 7164827 - 7164754
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||| ||| |||| |||||| ||||||||||||||||| ||||| |  |||||| ||||||| || |||||    
T  7164827 gaattctactctttactcaaatggattcgctcattctcaaaataaatgattaaaatatccctacgcatattaac 7164754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 554 - 599
Target Start/End: Complemental strand, 7826178 - 7826133
Alignment:
Q  554 gctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    |||||||| ||||| || | ||||||||||||||||||||||||||    
T  7826178 gctcattcccaaagaaatttaccaaaatacccctacgtatgttaac 7826133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 760 - 805
Target Start/End: Complemental strand, 39224183 - 39224138
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcg 805  Q
    ||||||||  ||||| || |||||||||||||||||||||||||||    
T  39224183 tgagttaacacacgcaaggtttaacactagtgtgagttaactcgcg 39224138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 526 - 825
Target Start/End: Complemental strand, 17436619 - 17436322
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||| ||| ||||  ||||||  ||||||||||||| ||||||||||||||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcgctagtgcaaattacaacgtaa 17436520  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  17436519 cttaagatgcgttgcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccatgctaggcataaaactggtac 17436420  T
Q  726 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgc 825  Q
    |||||||| || |||||| ||||| | |||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  17436419 aaagcaagtacgaaaacaaaatttgagtagcg--tgagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtgctgatgctatatgc 17436322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 526 - 640
Target Start/End: Original strand, 32274184 - 32274298
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||| | | |||| |||||||| ||||||||||||| |||||||||||| ||| |||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattagaacataa 32274283  T
Q  626 cttaacatatgttgc 640  Q
    ||||| |||||||||    
T  32274284 cttaagatatgttgc 32274298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 760 - 966
Target Start/End: Complemental strand, 25403853 - 25403648
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagta 859  Q
    |||||||||||||||||||||||||||||| |||||||||||| || |||||||  |  |||   ||| ||||||     || || ||||||||||||||    
T  25403853 tgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcattggcagtggcagta 25403754  T
Q  860 gctgctgctgccttgttccatttgttact-gtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcata 957  Q
    ||||||||  | ||||||| ||  || || |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||   ||| ||||||    
T  25403753 gctgctgc--ctttgttcc-ttcattccttgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaactagaactcata 25403657  T
Q  958 atttagaga 966  Q
    |||||||||    
T  25403656 atttagaga 25403648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 526 - 610
Target Start/End: Original strand, 14153354 - 14153438
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    |||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgctagtg 14153438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 564 - 635
Target Start/End: Original strand, 31483681 - 31483752
Alignment:
Q  564 aaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaacatat 635  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31483681 aaagtaaataatcaaaatgcccctacgcatgttaacatgcgctagtgcaaattacaacgtaacttaagatat 31483752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 898 - 980
Target Start/End: Complemental strand, 17436327 - 17436243
Alignment:
Q  898 atatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagag-acatgcagtcattca 980  Q
    ||||||||| ||||||||||||||||||||| |||||||||| ||||||  ||| |||||||||||||| |||||||||||||||    
T  17436327 atatgcaattattcaataataattttggtacaaccattcatttattcatctagaactcataatttagagaacatgcagtcattca 17436243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 526 - 605
Target Start/End: Complemental strand, 35060973 - 35060894
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||||| | ||||||||  ||||||||||  ||||||| |||||||| ||||||||||||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgt 35060894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 526 - 660
Target Start/End: Original strand, 12703815 - 12703948
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||| ||||||||| ||||||| |||| |||| | | ||||||||| | | |||| ||| |||||||  ||||||||| |||||||||||| |||||||    
T  12703815 gaattatgctcattatccaaatggattctctcaattttaaagtaaatgatcgaaatgccc-tacgtatactaacatgcgctagtgcaaattataacgtaa 12703913  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagt 660  Q
    |||||  || ||||||| | ||||| |||||||||    
T  12703914 cttaagctacgttgcgtaagttaacacacgttagt 12703948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 607
Target Start/End: Complemental strand, 31522613 - 31522532
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 607  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||| ||| |||| |||||||| | |||||| |||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcgtta 31522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 525 - 666
Target Start/End: Original strand, 24326943 - 24327084
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||| ||     ||||| ||| |   ||||| |||||||||||||| | | ||||     
T  24326943 ggaattctgctcattactcaaatgaattcgctcattcccaaaataaatgacatttttacccttacttgacttaacttgcgttagtgcaaaatgctacgtg 24327042  T
Q  625 acttaacatatgttgcgtgacttaactcacgttagtacaaaa 666  Q
    |||||| | |  | | ||||||||||||||| ||||||||||    
T  24327043 acttaagacaaatagtgtgacttaactcacgctagtacaaaa 24327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 607
Target Start/End: Complemental strand, 4321815 - 4321735
Alignment:
Q  527 aattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 607  Q
    |||||||||||||||| ||||   |||||||||| ||||||||||| | |||||| || ||||| | ||||||||||||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaatgcctctacgcaagttaacatgcgtta 4321735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 543 - 630
Target Start/End: Original strand, 4319101 - 4319188
Alignment:
Q  543 caaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaacttaa 630  Q
    |||||| ||| |||||||   ||||||||| | | |||| |||||||| ||||||||||||  |||||||||||| ||||||||||||    
T  4319101 caaatggatttgctcattactaaagtaaatgatcgaaatgcccctacgcatgttaacatgcactagtgcaaattagaacgtaacttaa 4319188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 806545 - 806618
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| |||||||||    || |||||||||||||||||||  | ||||||| |||||||||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaac 806618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 642 - 710
Target Start/End: Complemental strand, 25403969 - 25403901
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||  ||||||||    
T  25403969 tgacttaagtcacgctagttcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctag 25403901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 760 - 802
Target Start/End: Original strand, 24359144 - 24359185
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactc 802  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  24359144 tgagttaagtcacgc-agatttaacactagtgtgagttaactc 24359185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 7204013 - 7203956
Alignment:
Q  542 ccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    |||||||| || |||| ||| |||||||||| | ||||||||||||||| ||||||||    
T  7204013 ccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaac 7203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 8e-39; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 525 - 639
Target Start/End: Original strand, 8273244 - 8273358
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||    
T  8273244 ggaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgtttgtgcaaattacaacgta 8273343  T
Q  625 acttaacatatgttg 639  Q
    |||||| ||||||||    
T  8273344 acttaagatatgttg 8273358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 604
Target Start/End: Original strand, 12967270 - 12967349
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaata-accaaaatacccctacgtatgttaacatgcg 604  Q
    ||||||||||||||||| |||||  | ||||||||||||||||||| |  |||||||||||||||| |||||||||||||    
T  12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcg 12967349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22788064 - 22787998
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgt 591  Q
    |||||||||||| ||||||||||| ||| | |||||| |||||||||| ||||||||||||||||||    
T  22788064 ggaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacgt 22787998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 760 - 966
Target Start/End: Complemental strand, 943090 - 942885
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagta 859  Q
    ||||||||||||||||||||||||||| || ||||||||||||  | |||||||  || |||   ||| | ||||     ||  ||||||||||||||||    
T  943090 tgagttaagtcacgctagttttaacacgagcgtgagttaactcaagctggtgcttctgctatgcacgctgtagaccagactggtagtggcagtggcagta 942991  T
Q  860 gctgctgctgccttgttccatttgttact-gtttagtgaatatgcaatcattcaataataattttggt-acaccattcattgattcattcagatctcata 957  Q
    ||||||||  | ||||||| ||  || || |||||||||| ||||||| ||||||||||||||||||| | | ||||||||||||||  |||| |  |||    
T  942990 gctgctgc--ctttgttcc-ttcattccttgtttagtgaacatgcaattattcaataataattttggtaaaatcattcattgattcaaccagaacgaata 942894  T
Q  958 atttagaga 966  Q
    |||||||||    
T  942893 atttagaga 942885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 615
Target Start/End: Original strand, 22727662 - 22727751
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaat 615  Q
    |||| |||||| ||||||||||  ||| ||| |||| |||||||||| ||| ||||||||||||||  ||||||||||| ||||||||||    
T  22727662 gaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaacatgcgctagtgcaaat 22727751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 760 - 813
Target Start/End: Complemental strand, 24929140 - 24929087
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgct 813  Q
    |||||||||||||||||||||||||||||| |||||||||||| || |||||||    
T  24929140 tgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgct 24929087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 11712961 - 11713041
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 609  Q
    |||||||||||||| | |||  ||||||||||| |||||||||   ||||||| |||||||||||||||||||||| ||||    
T  11712961 ttctgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgctagt 11713041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 710
Target Start/End: Complemental strand, 25678962 - 25678782
Alignment:
Q  530 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactta 629  Q
    ||||||||||||| |||||  |||||| |||| |||||||||  |||    ||||| |||  |  |||||||||| | |||||||||  ||||| |||||    
T  25678962 tctgctcattaccaaaatggtttcgctgattcccaaagtaaaagacctttttacccttacacaacttaacatgcgcttgtgcaaattggaacgtgactta 25678863  T
Q  630 acatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    | | |||| ||||||||||| ||||| |||| ||| ||| ||| |||||||||| |||||   ||||||||  ||||||||    
T  25678862 agacatgtagcgtgacttaagtcacgctagtgcaatatgaaacacaacttaagttacgttacttgacttaagtcacgctag 25678782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 595 - 710
Target Start/End: Complemental strand, 943252 - 943138
Alignment:
Q  595 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 694  Q
    |||||||||| | |||||||||  ||||| |||||| | | || ||||||||||| ||||| |||| ||| ||| ||||||||||||||||||||   ||    
T  943252 ttaacatgcgct-gtgcaaattggaacgtgacttaagacaggtagcgtgacttaagtcacgctagtgcaatatgaaacgcaacttaagtcacgttacttg 943154  T
Q  695 acttaaaccacgctag 710  Q
    ||||||  ||||||||    
T  943153 acttaagtcacgctag 943138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 11573633 - 11573712
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||||||||  |  |||||||||| |||||||||   | ||||| ||||||||||||||||| |||||    
T  11573633 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcaaaaatgcccctacgtatgttaacttgcgt 11573712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 605
Target Start/End: Original strand, 18387241 - 18387320
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    |||||||||||||||| ||||||  |  |||||||| ||||||||||| | ||||| ||| |||| ||||||||||||||    
T  18387241 gaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaacatgcgt 18387320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 25389928 - 25389873
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaat 581  Q
    ||||||||||| |||| |||||| ||| ||||||||||||||||||| ||||||||    
T  25389928 gaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaat 25389873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 20685006 - 20685051
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaa 571  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaa 20685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 37893086 - 37893013
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||   ||||||| |||||| | ||||||||    
T  37893086 gaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaac 37893013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 926
Target Start/End: Complemental strand, 24929059 - 24928982
Alignment:
Q  847 ggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggt 926  Q
    |||||||||||||||||||||  | ||||||| |   |  |||||||||||| ||||||| |||||||||||||||||||    
T  24929059 ggcagtggcagtagctgctgc--ctttgttccttcattccctgtttagtgaacatgcaattattcaataataattttggt 24928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 887 - 926
Target Start/End: Complemental strand, 25678635 - 25678596
Alignment:
Q  887 ctgtttagtgaatatgcaatcattcaataataattttggt 926  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  25678635 ctgtttagtgaacatgcaattattcaataataattttggt 25678596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 700
Target Start/End: Complemental strand, 24929244 - 24929186
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaa 700  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||    
T  24929244 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaa 24929186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 767 - 813
Target Start/End: Complemental strand, 25678741 - 25678695
Alignment:
Q  767 agtcacgctagttttaacactagtgtgagttaactcgcgttggtgct 813  Q
    |||||||||||||||||||| || |||||||||||| || |||||||    
T  25678741 agtcacgctagttttaacacgagcgtgagttaactcacgctggtgct 25678695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 610
Target Start/End: Original strand, 2154261 - 2154346
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    ||||||||||||||||||||||  |  |||||||||| |||||||||  | ||||||  ||||||| |  ||||||||| ||||||    
T  2154261 ggaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgcattagtg 2154346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 529 - 650
Target Start/End: Complemental strand, 5247 - 5126
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 628  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaactt 5148  T
Q  629 aacatatgttgcgtgacttaac 650  Q
    || ||| |  ||||||||||||    
T  5147 aagataagcagcgtgacttaac 5126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 525 - 642
Target Start/End: Complemental strand, 19365474 - 19365357
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgta 624  Q
    |||||||||||||||||| ||||| |||||||||||| ||||  |||| ||| ||||||||||||| || |||||||||| |||||||||||| ||||||    
T  19365474 ggaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcgctagtgcaaattagaacgta 19365375  T
Q  625 acttaacatatgttgcgt 642  Q
    | |||| |||||||||||    
T  19365374 atttaagatatgttgcgt 19365357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 530 - 647
Target Start/End: Original strand, 38386178 - 38386295
Alignment:
Q  530 tctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactta 629  Q
    ||||||||||| ||||||| |||||||||||  |||||||||| |   |||| |||||||| ||||||||||||| |||||||||||| |||||||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaactta 38386277  T
Q  630 acatatgttgcgtgactt 647  Q
    | ||| || |||||||||    
T  38386278 agataagtagcgtgactt 38386295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 526 - 662
Target Start/End: Complemental strand, 5061806 - 5061671
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||| ||||||  |||| ||||| | | ||||  |  |||| ||||||||||| | || |||||||||||||||||    
T  5061806 gaattctgctcattacccaaatggattcactcatttccaaaataaatgaacgaaatgtcgttacgcatgttaacatgtgctaatgcaaattacaacgtaa 5061707  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtac 662  Q
    |||||||||| | ||||||||||||||||| ||||||    
T  5061706 cttaacatat-tcgcgtgacttaactcacgctagtac 5061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 887 - 966
Target Start/End: Original strand, 41798906 - 41798986
Alignment:
Q  887 ctgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||  |||| |  ||||||||||||    
T  41798906 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaacgaataatttagaga 41798986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 887 - 966
Target Start/End: Original strand, 44552418 - 44552498
Alignment:
Q  887 ctgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||  |||| |  ||||||||||||    
T  44552418 ctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagaga 44552498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 689
Target Start/End: Original strand, 44552026 - 44552189
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||| |||||||  |||||||||||| ||| ||||  |||    || || |||| |  |||||||||| |||||||||||  ||||| |    
T  44552026 gaattctgctcattatccaaatggtttcgctcattcttaaaataaaagacctttttatccttacgcaacttaacatgcgctagtgcaaattgaaacgtga 44552125  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgtt 689  Q
    ||||| | | || ||||||||||| ||||| || | ||| ||| ||||||||||||||||||||    
T  44552126 cttaagacaggtagcgtgacttaagtcacgctaatgcaatatgaaacgcaacttaagtcacgtt 44552189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 587  Q
    ||||||||||| |||||||||||| || |||||||| |||||||||| ||||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 38790884 - 38790962
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctc-aaagtaaataaccaaaatacccctacgtatgttaacatgc 603  Q
    ||||||||||||||| |||||||  |||||||||| || ||||||||   |||||||||||||||| ||||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaacatgc 38790962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 26009369 - 26009442
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| ||||||||| || || |||||||| |||||||||| |||||||||  |||||| ||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaac 26009442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 529 - 650
Target Start/End: Original strand, 38047649 - 38047770
Alignment:
Q  529 ttctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaactt 628  Q
    ||||||| |||| | ||||  ||||||| ||| | ||| ||||| | ||||||  | ||||| ||||||||||||| |||| ||||||| ||||||||||    
T  38047649 ttctgcttattatctaaatagattcgcttatttttaaaataaatgatcaaaatgtctctacgcatgttaacatgcgctagtacaaattataacgtaactt 38047748  T
Q  629 aacatatgttgcgtgacttaac 650  Q
    || ||| || ||||||||||||    
T  38047749 aagataagtagcgtgacttaac 38047770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 606
Target Start/End: Original strand, 31823589 - 31823669
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtt 606  Q
    |||||||||||||||||||||  |  |||||||||| |||| |||||| ||||||| ||||| |  |||||||||||||||    
T  31823589 gaattctgctcattacccaaacaatatcgctcattcccaaaataaatatccaaaatgcccctgcacatgttaacatgcgtt 31823669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 33839520 - 33839474
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaat 572  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  33839520 gaattctgctctttatccaaatggattcgctcattctcaaagtaaat 33839474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 764 - 802
Target Start/End: Original strand, 41798791 - 41798829
Alignment:
Q  764 ttaagtcacgctagttttaacactagtgtgagttaactc 802  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  41798791 ttaagtcacgctagttttaacactagcgtgagttaactc 41798829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 26012031 - 26011958
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    ||||||||||| ||||||||| || ||   ||||||||||||||||| ||||||||||| ||| | ||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaac 26011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 760 - 813
Target Start/End: Original strand, 44552309 - 44552362
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgct 813  Q
    ||||||||||||| ||||||||||||| || |||||||||||| || |||||||    
T  44552309 tgagttaagtcacactagttttaacacgagcgtgagttaactcacgatggtgct 44552362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 526 - 610
Target Start/End: Complemental strand, 1537324 - 1537240
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtg 610  Q
    |||||||||||||||||||||     ||| |||||||||||||||||   |||||| ||||| || ||||||||||||| |||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgctagtg 1537240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 44552781 - 44552701
Alignment:
Q  525 ggaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgt 605  Q
    ||||||||||||||||||||||  |  ||||||||||||||||||||   | ||||| | |||||| |||||||| |||||    
T  44552781 ggaattctgctcattacccaaacaatatcgctcattctcaaagtaaaagtcgaaaatgctcctacgcatgttaacttgcgt 44552701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 28139513 - 28139452
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 587  Q
    ||||||||||  ||||||||||| ||| || ||||| |||||||||| |||||||| |||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccct 28139452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 8e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 526 - 650
Target Start/End: Complemental strand, 5967315 - 5967191
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| | | |||| |||||||| ||||||||||||| |||||||||||| |||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcgctagtgcaaattataacgtaa 5967216  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || | ||||||||||    
T  5967215 cttaagataagtagtgtgacttaac 5967191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 526 - 650
Target Start/End: Complemental strand, 34279639 - 34279515
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    ||||||||||||||||  ||||| ||||||||||||  ||||||||| | | |||| |||||||  |||||||||||||||||||||||||| |||||||    
T  34279639 gaattctgctcattacttaaatggattcgctcattcctaaagtaaatgatcgaaatgcccctacacatgttaacatgcgttagtgcaaattataacgtaa 34279540  T
Q  626 cttaacatatgttgcgtgacttaac 650  Q
    ||||| ||| || ||||||||||||    
T  34279539 cttaagataagtagcgtgacttaac 34279515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 526 - 742
Target Start/End: Original strand, 9418587 - 9418803
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||  ||||   ||||| |||| |  ||||||||||  ||||||||||  ||||| |    
T  9418587 gaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagaccattttacccttacgcaacttaacatgcgcaagtgcaaattggaacgtga 9418686  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||| | | || ||||||||||| ||||| |||| |||||||  ||||||||||||||| |||   ||||||||  |||||| |   |||| | |||||    
T  9418687 cttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgacacgcaacttaagtcatgttacttgacttaagtcacgctggttctaaatctggtac 9418786  T
Q  726 aaagcaagcaccaaaac 742  Q
    |||||| ||||||||||    
T  9418787 aaagcatgcaccaaaac 9418803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 760 - 966
Target Start/End: Complemental strand, 9387725 - 9387520
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgctgatgttatatgcgcagcagacttacgtgacagtggcagtggcagta 859  Q
    ||||||||||||||||||| ||||||||||  ||||||||||| || |||||||  |  |||   ||| | ||||     || || ||||||||||||||    
T  9387725 tgagttaagtcacgctagtcttaacactagcatgagttaactcacgctggtgcttctactatgcacgctgtagaccagactggcaatggcagtggcagta 9387626  T
Q  860 gctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataa 958  Q
    | ||||||  | ||||||| |   || |||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||  |||| |||||||    
T  9387625 gttgctgc--ctttgttccttcatttcctgtttagtgaacatgcaattattcaataataattttggtacaaccattaattgattcaaccagaactcataa 9387528  T
Q  959 tttagaga 966  Q
    ||||||||    
T  9387527 tttagaga 9387520  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 526 - 642
Target Start/End: Original strand, 31762241 - 31762357
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||  |||||| |||||||||||| |||||||||||| | ||||| ||||| | ||||||||||||  ||||||||||||  ||||||    
T  31762241 gaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaacatgcactagtgcaaattattacgtaa 31762340  T
Q  626 cttaacatatgttgcgt 642  Q
     | || ||| |||||||    
T  31762341 ttaaagatacgttgcgt 31762357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 526 - 609
Target Start/End: Complemental strand, 33220865 - 33220782
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagt 609  Q
    |||||||||||||||||||||||  ||| ||||||| |||||||||    |||||| |||||||| ||||||||||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcgttagt 33220782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 710
Target Start/End: Complemental strand, 9387939 - 9387824
Alignment:
Q  595 ttaacatgcgttagtgcaaattacaacgtaacttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtg 694  Q
    ||||||||||||||||||||||  ||||| |||||| | | || || |||||||| ||||| |||| ||| ||| || |||||||||||||||||   ||    
T  9387939 ttaacatgcgttagtgcaaattggaacgtgacttaagacaggtagcatgacttaagtcacgctagtgcaatatgaaatgcaacttaagtcacgttacttg 9387840  T
Q  695 acttaaaccacgctag 710  Q
    ||||||  ||||||||    
T  9387839 acttaagtcacgctag 9387824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 3588623 - 3588562
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccct 587  Q
    ||||||| ||| ||||||||||||||| |||||||| |||| ||||| |||||||| |||||    
T  3588623 gaattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccct 3588562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 43641051 - 43640978
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaac 599  Q
    |||||||||||||||||||||||  || |||||||  |||||||||| | |||| | |||||||| ||||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaac 43640978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 642 - 710
Target Start/End: Complemental strand, 9387841 - 9387773
Alignment:
Q  642 tgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    |||||||| ||||| |||| ||||||  |||||||||||||||||||||  ||||||||  ||||||||    
T  9387841 tgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctag 9387773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 3588340 - 3588402
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaataccccta 588  Q
    ||||||||||| ||| |||| || ||| | ||||||||||||||||| ||||||||| |||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgaccaaaataacccta 3588402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 846 - 966
Target Start/End: Complemental strand, 2587 - 2468
Alignment:
Q  846 tggcagtggcagtagctgctgctgccttgttccatttgttactgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattca 944  Q
    ||||||||||||||||||||||  | ||||||| |   |  ||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2587 tggcagtggcagtagctgctgc--ctttgttccttcattccctgtttagtaaacatgcaattattcaataataattttggtacaaccattcattgattca 2490  T
Q  945 ttcagatctcataatttagaga 966  Q
      |||| |||||||||||||||    
T  2489 accagaactcataatttagaga 2468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 710
Target Start/End: Complemental strand, 2931 - 2747
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||  |||    ||||| || | |  |||||||||| |||||||||||  ||  | |    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaaagacctttttacccttatgcaacttaacatgcgctagtgcaaattggaaaatga 2832  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctag 710  Q
    ||||| | | || || |||||||| ||||| |||| ||| | | ||||||||||||| ||||||   ||||||||  ||||||||    
T  2831 cttaagacaggtagcatgacttaagtcacgctagtgcaataagaaacgcaacttaagccacgttacttgacttaagtcacgctag 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 760 - 802
Target Start/End: Complemental strand, 2667 - 2625
Alignment:
Q  760 tgagttaagtcacgctagttttaacactagtgtgagttaactc 802  Q
    ||||||||||||| ||||||||||||| || ||||||||||||    
T  2667 tgagttaagtcacactagttttaacacgagcgtgagttaactc 2625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 888 - 966
Target Start/End: Original strand, 23829 - 23908
Alignment:
Q  888 tgtttagtgaatatgcaatcattcaataataattttggtac-accattcattgattcattcagatctcataatttagaga 966  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||  |||| |  ||||||||||||    
T  23829 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagaga 23908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 526 - 813
Target Start/End: Original strand, 23487 - 23772
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgttagtgcaaattacaacgtaa 625  Q
    |||||||||||||||  ||||||  || ||||||||||||||||||  |||    ||||| |||  |  |||||||||| |||||||||||  ||||| |    
T  23487 gaattctgctcattattcaaatggttttgctcattctcaaagtaaaagacctttttacccttacacaacttaacatgcgctagtgcaaattggaacgtga 23586  T
Q  626 cttaacatatgttgcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccacgctaggcataaaacaggtac 725  Q
    ||||| | | || |||| |||||| ||||| |||| ||||||  || |||||||||||||||||   ||||||||  ||||||||   |    | |||||    
T  23587 cttaagacaggtagcgtcacttaagtcacgctagtgcaaaattaaatgcaacttaagtcacgttatttgacttaagtcacgctagttctgtctctggtac 23686  T
Q  726 aaagcaagcaccaaaacagaattttactagcgtctgagttaagtcacgctagttttaacactagtgtgagttaactcgcgttggtgct 813  Q
    |||||| |||||||||       | | ||||||  |||||||||||||||||||||||||| ||  ||||||||||| || |||||||    
T  23687 aaagcatgcaccaaaaacttcaatgagtagcgt--gagttaagtcacgctagttttaacacgagcttgagttaactcacgctggtgct 23772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 526 - 607
Target Start/End: Original strand, 1475 - 1556
Alignment:
Q  526 gaattctgctcattacccaaatgaattcgctcattctcaaagtaaataaccaaaatacccctacgtatgttaacatgcgtta 607  Q
    |||||||||||||||||||||||  | |||||||| | ||||||||   ||||||| ||||| || ||||||||||||||||    
T  1475 gaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaacatgcgtta 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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