View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5632-Insertion-4 (Length: 985)
Name: NF5632-Insertion-4
Description: NF5632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5632-Insertion-4 |
 | |
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| [»] chr8 (15 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 639; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 155 - 985
Target Start/End: Original strand, 3903207 - 3904040
Alignment:
| Q |
155 |
tgtttggtcggccctagttttgctgcctcattaattaaaatgtcaagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaa |
254 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3903207 |
tgtttggtcggccctagttttattgcctcattaattaaaatgccaagaatgatataaaaatgaatggtatataattgtgagctgaagtcgtaaaatggaa |
3903306 |
T |
|
| Q |
255 |
aaacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacat |
354 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3903307 |
acacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacat |
3903406 |
T |
|
| Q |
355 |
gcaaagcttgcaataactattcgattgtatcaattattctacaagaaacaagaagaggatcagcgacaaatatgtatacacacttgttgaaccaattctc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | ||| || ||||| ||| |
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|
| T |
3903407 |
gcaaagcttgcaataactattcgattgtaacaattattctacaagaaacaagaaaaggatcagcgacaaatatcaa--cactttttttgaagaaatatat |
3903504 |
T |
|
| Q |
455 |
ataaa--------gaacaaaatatcaactacattaggaaatgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctcc |
546 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3903505 |
atacacacttgttgaacaaaatatcaactacattaggaaatgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctcc |
3903604 |
T |
|
| Q |
547 |
ttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaatattcttttaaccacggaaaatgtttgataaattatttgatgaat |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3903605 |
ttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaatattcttttaaccacggaaaatgtttgataaattatttgatgaat |
3903704 |
T |
|
| Q |
647 |
tatnnnnnnnttataaaaatttattagaattgatctactaatactaaataaataaatagtttgttaacttaccgtcagataaagtggagtcactctcttt |
746 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
3903705 |
tataaaaaaattataaaaaattattagaattgatctactaatactaaataaataaaaa--atgttaatttaccgtcggataaagtggagtcactttcttt |
3903802 |
T |
|
| Q |
747 |
ttggttattatgtgtgcagaggtacgagcagatatttgtagaaagcgcagtaaaacatggggagatccttgtttttcctctgaaaactgtaatagatatt |
846 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3903803 |
ttggttattatgtgtgcagaggtacaagcagatatttgtagaaagcgcagtaaaacatggggagatccttgttttacctctgaaaactgtaatagatatt |
3903902 |
T |
|
| Q |
847 |
gcatcaaatctgaaaacggagttggcgggatttgcatgtctgatggcattggatttaccttgcttctgtgaattcatctgctgagctaatcatcaacact |
946 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3903903 |
gcatcaaatctgaaaatggagttggcgggatttgcatgtctgatggcattggattta-cttgcttctgtgaattcatctgctgagcaaatcatcaacact |
3904001 |
T |
|
| Q |
947 |
aaatttctgttcaagcaatgtgatatttatttctaaagt |
985 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3904002 |
aaatttctgttcaagcaatgtgacatttatttctaaagt |
3904040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 434 - 985
Target Start/End: Original strand, 3906310 - 3906878
Alignment:
| Q |
434 |
acacttgttgaaccaattctcataaagaacaaaatatcaactacattaggaaatgacttcctcttctcctaaattctacaccatctttctgttcctcagc |
533 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3906310 |
acacttgttgaaccatttctcatgaagaacaaaatatcatctacattaggaaatggcttcctcttctcctaaattctacatcatctttctgttcctcagc |
3906409 |
T |
|
| Q |
534 |
cttgccctcctccttttttccacatggggtacgtttatataattaagctattggtttaaatagatcaatattcttttaaccacggaaaatgtttgataaa |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||| | |||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
3906410 |
cttgccctcctccttttttccacatggggtacgtctatataattaagctttaggtgtgtatagatcaattaccttttaaccacggaaaatgtttgagaaa |
3906509 |
T |
|
| Q |
634 |
ttatttgatgaattat----------nnnnnnnttataaaaatttattagaattgatctactaatactaaataaataaatagtttgttaacttaccgtca |
723 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
3906510 |
ttatttgatgaattataaaaataaaataaaaaattataaaaatttattagaattgatctactaatactaaataaataaaaa--atgttaatttaccgtca |
3906607 |
T |
|
| Q |
724 |
gataaagtggag-tcactctctttttggttattatgtgtgcagaggtacgagcagatatttg------tagaaagcgcagtaaaacatggggagatcctt |
816 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| |||| | ||| |||| || |||||||||| ||| || |
|
|
| T |
3906608 |
gataaagtggagttcactatcttttttgttattatgtgtgcagaggtatgagcagatctttgtcgaacttgaaggcgcgatacaacatggggaaatcttt |
3906707 |
T |
|
| Q |
817 |
gtttttcctctgaaaactg--taatagatattgcatcaaatctgaaaacggagttggcgggatttgcatgtctgatggcattggatttaccttgcttctg |
914 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||| |||||| |||||||||| |||| ||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
3906708 |
gtttggattctgaagtctgtataatagatattgcatcggctctgaacacggagttggtgggacttgcatgcctgatggccttggattt-gcttgcttctg |
3906806 |
T |
|
| Q |
915 |
tgaattcatctgctgagctaatcatcaacactaaatttctgttc-aagcaatgtgatatttatttctaaagt |
985 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||| || ||||||||| | |||||||||||| |
|
|
| T |
3906807 |
tgaattcatctgctgaacaaatcatcaacactaaatttttgttcaaatcaatgtgatttctatttctaaagt |
3906878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 198 - 402
Target Start/End: Original strand, 3906023 - 3906217
Alignment:
| Q |
198 |
caagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaaaaacatactaagtttgatatatacaacaagagggagaagcaag |
297 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
3906023 |
caagaatgatataaaaatgcatagtatataattgtgagccgaagtcgtaaaatggaa-------ctaagtt-ga-atatacaacaagagggagaagcaac |
3906113 |
T |
|
| Q |
298 |
agtactactagacaagaaaataaataatgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtatcaattattctaca |
397 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
3906114 |
agtacta-tggacaagaaaataaataatgaatatcccaagatagaaaggtgatacatggaaagcttgcaaaaactattcgattgtatcaatttttctaca |
3906212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 3903085 - 3903198
Alignment:
| Q |
8 |
tcactgattcattcaggggagaggagtgggatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattcttatttgactttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3903085 |
tcactgattcattcaggggagaggagtggaatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattcttattttactttt |
3903184 |
T |
|
| Q |
108 |
tctaacatagaaga |
121 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3903185 |
tctaacatagaaga |
3903198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 224 - 388
Target Start/End: Original strand, 3900277 - 3900438
Alignment:
| Q |
224 |
tataattgtgaggtgaagtcgtaaaatggaaaaacatactaagtttgatatatacaacaagagggagaagcaagagtactactagacaagaaaataaata |
323 |
Q |
| |
|
|||||||||||| ||||||| ||||||| | | |||| ||||||||||| ||||||||| | |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3900277 |
tataattgtgagttgaagtcataaaatgaattcaaatacagagtttgatatacgcaacaagagtgtgaagaaagagtactactagacaagaaaa-aaata |
3900375 |
T |
|
| Q |
324 |
atgaatatcccaagatagaaaggtgatacatgcaaagcttgcaataactattcgattgtatcaat |
388 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||| |||||| |||| |||| |||||||||| |
|
|
| T |
3900376 |
atgaatattccaag-ta-aaaggtgatacatgcaaagtttgcaacaactcttcggttgtatcaat |
3900438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 432 - 566
Target Start/End: Original strand, 3876444 - 3876578
Alignment:
| Q |
432 |
acacacttgttgaaccaattctcataaagaacaaaatatcaactacattaggaa---atgacttcctcttctcctaaattctacaccatctttctgttcc |
528 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| ||||||| | | ||| |||||||| | |||||||||||| ||||||||||||| | |
|
|
| T |
3876444 |
acacacttgttgaagcaattctcataaagaacaaaacatcatttacattaagcaagcatggcttcctctacgcctaaattctacgccatctttctgtttc |
3876543 |
T |
|
| Q |
529 |
tcagccttgccctcctccttttttccacatggggtacg |
566 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3876544 |
tcagcattgc---actccttttttccacatggggtacg |
3876578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 484 - 557
Target Start/End: Original strand, 3887985 - 3888058
Alignment:
| Q |
484 |
aaatgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccaca |
557 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
3887985 |
aaatggcttgctcttctactaaattctacaccatctttctgttcctcagctttgctctcctccttttctccaca |
3888058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 3894373 - 3894508
Alignment:
| Q |
79 |
tttgtaaaatcaattcttatttgactttttctaacatagaagacct-attttagtattcttgctaggccataaaatatgtttggtcggccctagtttt-g |
176 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||| | ||| | ||||||| | |
|
|
| T |
3894373 |
tttgtaaaatcaattcttattt-actttttctaacatagaagacctcattttagtatttgcgttaggccacaaaatatgttgagccggacatagttttcg |
3894471 |
T |
|
| Q |
177 |
ctgcctcattaattaaaatgtcaagaatgatataaaaa |
214 |
Q |
| |
|
|| || |||||| |||| ||||||||||||||||||| |
|
|
| T |
3894472 |
ct-acttattaatcaaaacgtcaagaatgatataaaaa |
3894508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 486 - 584
Target Start/End: Original strand, 3822111 - 3822209
Alignment:
| Q |
486 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat |
584 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| || || ||| |||| ||||||||||| || |||| ||||||| || ||| |||||||||| |
|
|
| T |
3822111 |
atgacttcctctgctcgtaaattctacaccatctttctttttctgagctttgcactcctccttttctcaacattgggtacgattttatgattaagctat |
3822209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 486 - 584
Target Start/End: Original strand, 3826564 - 3826662
Alignment:
| Q |
486 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat |
584 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||| || || ||| |||| ||||||||||| ||||||| ||||||| || ||| |||||||||| |
|
|
| T |
3826564 |
atgacttcctctgctcgtaaattctacgccatctttctatttctgagctttgcactcctccttttctccacattgggtacgattttatgattaagctat |
3826662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 486 - 584
Target Start/End: Original strand, 3829510 - 3829608
Alignment:
| Q |
486 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat |
584 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||| || || ||| |||| ||||||||||| ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
3829510 |
atgacttcttctccttgtaaattctacaccatctttctttttcttagctttgcactcctccttttctccacattgggtaagactatatgattaagctat |
3829608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 486 - 584
Target Start/End: Original strand, 3864245 - 3864343
Alignment:
| Q |
486 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat |
584 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||| || || ||| |||| ||||||||||| ||||||| ||||| | || ||| |||||||||| |
|
|
| T |
3864245 |
atgacttcctctcctagtaaattctacgccatctttctttttctgagctttgcactcctccttttctccacattgggtatgattttatgattaagctat |
3864343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 486 - 584
Target Start/End: Original strand, 3868606 - 3868704
Alignment:
| Q |
486 |
atgacttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaagctat |
584 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || || ||| |||| ||| ||||||| ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
3868606 |
atgacttcctctccttgtaaattctacaccatctttctttttcttagctttgcactcatccttttctccacattgggtaagactatatgattaagctat |
3868704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 490 - 579
Target Start/End: Original strand, 3900635 - 3900724
Alignment:
| Q |
490 |
cttcctcttctcctaaattctacaccatctttctgttcctcagccttgccctcctccttttttccacatggggtacgtttatataattaa |
579 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||| ||||| | | |||||||| || || | ||||||| |||||||||||| |
|
|
| T |
3900635 |
cttcctcttctcctaaattgtttaccatctttctgtttctcatccttgtcgtgctccttttctcaacttcgggtacgattatataattaa |
3900724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 3905793 - 3905840
Alignment:
| Q |
77 |
tttttgtaaaatcaattcttatttgactttttctaacatagaagacct |
124 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||| ||||||| |
|
|
| T |
3905793 |
tttttgtaaaatcaattcttaatttactttttctatcatataagacct |
3905840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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