View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5632-Insertion-5 (Length: 890)

Name: NF5632-Insertion-5
Description: NF5632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5632-Insertion-5
NF5632-Insertion-5
[»] chr8 (25 HSPs)
chr8 (8-334)||(44903915-44904241)
chr8 (342-640)||(44903558-44903856)
chr8 (342-640)||(44917030-44917328)
chr8 (26-285)||(44898014-44898267)
chr8 (636-792)||(44902999-44903157)
chr8 (794-886)||(37038477-37038571)
chr8 (803-883)||(5957838-5957919)
chr8 (803-886)||(504129-504213)
chr8 (803-886)||(12831055-12831139)
chr8 (803-886)||(14547930-14548014)
chr8 (794-890)||(44507091-44507189)
chr8 (791-886)||(40423951-40424048)
chr8 (803-886)||(10284639-10284723)
chr8 (803-886)||(15197341-15197425)
chr8 (803-886)||(34012304-34012388)
chr8 (291-334)||(44917387-44917430)
chr8 (803-886)||(1179948-1180032)
chr8 (803-886)||(10621095-10621179)
chr8 (803-886)||(15048190-15048273)
chr8 (803-886)||(23122605-23122689)
chr8 (833-886)||(8841440-8841493)
chr8 (846-886)||(9122237-9122277)
chr8 (803-886)||(43414589-43414673)
chr8 (803-884)||(32032733-32032814)
chr8 (803-873)||(14055613-14055684)
[»] chr5 (16 HSPs)
chr5 (792-886)||(2740270-2740366)
chr5 (803-886)||(13811660-13811744)
chr5 (803-886)||(15409618-15409702)
chr5 (803-886)||(18520892-18520976)
chr5 (803-886)||(31008996-31009080)
chr5 (803-886)||(35943900-35943984)
chr5 (803-886)||(40145415-40145499)
chr5 (803-883)||(35785207-35785288)
chr5 (803-886)||(14831822-14831906)
chr5 (803-886)||(33149646-33149730)
chr5 (793-885)||(41470425-41470519)
chr5 (803-883)||(28177783-28177864)
chr5 (795-886)||(36732950-36733043)
chr5 (791-883)||(6679693-6679787)
chr5 (840-890)||(31132390-31132440)
chr5 (833-886)||(42414310-42414363)
[»] chr7 (21 HSPs)
chr7 (803-886)||(3784003-3784087)
chr7 (794-886)||(3434560-3434654)
chr7 (786-886)||(7389379-7389481)
chr7 (795-886)||(19436195-19436288)
chr7 (794-886)||(36361921-36362015)
chr7 (803-886)||(19329850-19329934)
chr7 (794-886)||(36362024-36362118)
chr7 (791-886)||(38267035-38267132)
chr7 (795-886)||(40957706-40957799)
chr7 (795-886)||(8080391-8080484)
chr7 (795-886)||(38837216-38837309)
chr7 (803-886)||(32951501-32951585)
chr7 (803-886)||(12310914-12310996)
chr7 (803-883)||(4999525-4999606)
chr7 (807-883)||(35137545-35137622)
chr7 (846-886)||(3694419-3694459)
chr7 (835-886)||(16374832-16374883)
chr7 (803-886)||(21234409-21234493)
chr7 (803-886)||(35522884-35522968)
chr7 (803-886)||(46374810-46374894)
chr7 (803-885)||(26296652-26296735)
[»] chr1 (23 HSPs)
chr1 (792-886)||(51898691-51898787)
chr1 (791-886)||(48716290-48716387)
chr1 (795-886)||(2581914-2582007)
chr1 (795-886)||(38632329-38632422)
chr1 (803-886)||(27564743-27564827)
chr1 (803-883)||(9474887-9474968)
chr1 (803-886)||(37649206-37649290)
chr1 (803-886)||(44548384-44548468)
chr1 (803-886)||(47452328-47452412)
chr1 (793-886)||(50630455-50630550)
chr1 (803-884)||(26274440-26274522)
chr1 (803-886)||(43140-43224)
chr1 (803-886)||(3000327-3000411)
chr1 (803-886)||(32813255-32813339)
chr1 (795-886)||(8346396-8346489)
chr1 (833-886)||(38595193-38595246)
chr1 (837-886)||(48489343-48489392)
chr1 (805-886)||(11152386-11152467)
chr1 (833-883)||(41758844-41758894)
chr1 (807-864)||(49811557-49811615)
chr1 (833-886)||(13414800-13414853)
chr1 (814-883)||(45044571-45044641)
chr1 (803-863)||(3302564-3302625)
[»] chr4 (17 HSPs)
chr4 (795-886)||(50052436-50052529)
chr4 (803-886)||(41236355-41236439)
chr4 (795-886)||(42044375-42044468)
chr4 (803-886)||(6034052-6034136)
chr4 (795-886)||(480455-480548)
chr4 (791-886)||(11511470-11511567)
chr4 (795-886)||(29239885-29239978)
chr4 (795-886)||(48183057-48183150)
chr4 (803-886)||(31910200-31910284)
chr4 (803-886)||(50526179-50526263)
chr4 (803-886)||(54473541-54473625)
chr4 (803-886)||(3481662-3481746)
chr4 (846-886)||(29234253-29234293)
chr4 (803-890)||(53352570-53352657)
chr4 (833-886)||(24995115-24995168)
chr4 (833-886)||(41823921-41823974)
chr4 (795-871)||(23608234-23608312)
[»] chr2 (22 HSPs)
chr2 (803-886)||(13438351-13438435)
chr2 (794-886)||(32505656-32505750)
chr2 (795-886)||(10249390-10249483)
chr2 (803-886)||(4060693-4060777)
chr2 (803-886)||(17473028-17473112)
chr2 (803-886)||(28863463-28863547)
chr2 (795-873)||(38882835-38882914)
chr2 (794-886)||(5574496-5574590)
chr2 (795-886)||(9058479-9058572)
chr2 (803-883)||(19930831-19930912)
chr2 (795-886)||(33436108-33436201)
chr2 (792-886)||(7465743-7465839)
chr2 (803-883)||(40701486-40701567)
chr2 (803-886)||(27864712-27864796)
chr2 (803-886)||(28381663-28381747)
chr2 (803-886)||(40613910-40613994)
chr2 (795-886)||(20700814-20700907)
chr2 (795-886)||(30915462-30915555)
chr2 (803-886)||(2533132-2533215)
chr2 (803-886)||(42257201-42257285)
chr2 (803-890)||(36168844-36168932)
chr2 (803-884)||(45097745-45097827)
[»] chr6 (13 HSPs)
chr6 (794-886)||(11427614-11427710)
chr6 (803-886)||(17598562-17598646)
chr6 (803-886)||(32869686-32869770)
chr6 (803-886)||(22880666-22880750)
chr6 (795-883)||(15832576-15832666)
chr6 (833-886)||(23128135-23128188)
chr6 (803-886)||(31976256-31976340)
chr6 (807-880)||(31109414-31109488)
chr6 (795-886)||(6209473-6209566)
chr6 (791-886)||(29857822-29857919)
chr6 (794-859)||(22422053-22422120)
chr6 (803-875)||(9379731-9379804)
chr6 (795-862)||(12732481-12732550)
[»] chr3 (21 HSPs)
chr3 (795-886)||(49607413-49607506)
chr3 (803-886)||(53982019-53982103)
chr3 (803-886)||(33644208-33644292)
chr3 (803-886)||(52629308-52629392)
chr3 (833-883)||(9563038-9563088)
chr3 (795-879)||(36707439-36707525)
chr3 (795-883)||(54868906-54868996)
chr3 (784-870)||(11095377-11095465)
chr3 (803-862)||(11347954-11348014)
chr3 (803-877)||(33118868-33118943)
chr3 (794-886)||(17470403-17470497)
chr3 (803-884)||(48587101-48587183)
chr3 (833-886)||(8076432-8076485)
chr3 (833-886)||(27714899-27714952)
chr3 (833-886)||(31456728-31456781)
chr3 (803-886)||(26141540-26141624)
chr3 (806-886)||(26754706-26754787)
chr3 (803-886)||(41189772-41189856)
chr3 (803-886)||(51419368-51419452)
chr3 (796-862)||(39670012-39670079)
chr3 (805-886)||(20764923-20765005)
[»] scaffold1268 (1 HSPs)
scaffold1268 (803-886)||(937-1021)
[»] scaffold1267 (1 HSPs)
scaffold1267 (803-886)||(937-1021)
[»] scaffold0321 (1 HSPs)
scaffold0321 (803-886)||(10117-10201)
[»] scaffold0237 (1 HSPs)
scaffold0237 (791-886)||(4024-4121)
[»] scaffold0110 (1 HSPs)
scaffold0110 (807-884)||(8873-8951)
[»] scaffold0316 (1 HSPs)
scaffold0316 (837-886)||(17097-17146)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-179; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 44904241 - 44903915
Alignment:
Q  8 gattactcataaaataatcaagcagagattcttctgaattcaaggtgctaatgatggctttccaggtgtatggaatgcaaggatcgaaacaaccgtagtg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904241 gattaatcataaaataatcaagcagagattcttctgaattcaaggtgctaatgatggctttccaggtgtatggaatgcaaggatcgaaacaaccgtagtg 44904142  T
Q  108 ctataatgttaccatattcgttcctgccctcaatggccgcaaaaaagctaagagatggtgcagaaaaggttcacttcattcgtaacctttttaagctctg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44904141 ctataatgttaccatattcgttcctgccctcaatggccgcaaaaaagctaagagatggtgcagaaaaggttcacttcattcgtaacctttttaagctctg 44904042  T
Q  208 aacattcacatgtagagtcgatactcaatacaatttgatattggattttaaatctatttctttgagcatataattgttataatctttggtatcacctgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44904041 aacattcacatgtagagtcgatactcaatacaatttgatattggattttaaatctatttctttgaccatataattgttataatctttggtatcacctgtt 44903942  T
Q  308 tcacataaaaagatccattcaagacca 334  Q
    |||||||||||||||||||||||||||    
T  44903941 tcacataaaaagatccattcaagacca 44903915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 342 - 640
Target Start/End: Complemental strand, 44903856 - 44903558
Alignment:
Q  342 atgctataccaagagaagatgctggtgcattcgtctttcaccgcgtacttacggagggaccagagaacacatcaaaggttgtaggaaaagcacaaggatt 441  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44903856 atgctataccaagagaagatgctggtacattcgtctttcaccgcgtacttacggagggaccagagaacacatcaaaggttgtaggaaaagcacaaggatt 44903757  T
Q  442 cataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcattcaggtagtttgagtgtgcaagcaatc 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44903756 cataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcattcaggtagcttgagtgtgcaagcaatc 44903657  T
Q  542 aaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaa 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44903656 aaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaa 44903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 342 - 640
Target Start/End: Complemental strand, 44917328 - 44917030
Alignment:
Q  342 atgctataccaagagaagatgctggtgcattcgtctttcaccgcgtacttacggagggaccagagaacacatcaaaggttgtaggaaaagcacaaggatt 441  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44917328 atgctataccaagagaagatgctggtgcatttgtctttcaccgcgtacttacggagggaccagagaacacatcaaaggttgtaggaaaagcacaaggatt 44917229  T
Q  442 cataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcattcaggtagtttgagtgtgcaagcaatc 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44917228 cataatccctgtggaacagtttcagcaatcagaattcaatgttttgtatctcacttttgatacaccagatcattcaggtagcttgagtgtgcaagcaatc 44917129  T
Q  542 aaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgttcatggtgttgcagtttttactcaaacagatgaa 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44917128 aaagttgctcataaggaaagagaagaattcagagtggtaggaggaacaggttcgtttgcatttgctcatggtgttgcagtttttactcaaacagatgaa 44917030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 285
Target Start/End: Original strand, 44898014 - 44898267
Alignment:
Q  26 caagcagagattcttctgaatt-caaggtgctaatgatggctttccaggtgtatggaatgcaaggatcgaaacaaccgtagtgctataatgttaccatat 124  Q
    |||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44898014 caagcagagattcttctgaatttcgaagtgctaatgatggctttccaggtttatggaatgcaaggatcgaaacaaccgtagtgctataatgttaccatat 44898113  T
Q  125 tcgttcctgccctcaatggccgcaaaaaagctaagagatggtgcagaaaaggttcacttcattcgtaacctttttaagctctgaacattcacatgtagag 224  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||    
T  44898114 tcgttcctgccctcaatggccgcaaaaaagctaagagatgctgcagaaaaggttcacttcattcataacctctttaagttcttaacattcacatgtagag 44898213  T
Q  225 tcgatactcaatacaatttgatattggattttaaatctatttctttgagcatataattgtt 285  Q
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44898214 -------tcaatacaatttgatattggattttaaatctatttcttcgagcatataattgtt 44898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 636 - 792
Target Start/End: Complemental strand, 44903157 - 44902999
Alignment:
Q  636 atgaaaactaggattgtaatatggat-agtgtcctcaagtcggtgcattttattttttcattcagctgagcttgaattagttggctctatgacacttata 734  Q
    |||||||||||| | | ||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  44903157 atgaaaactaggttggcaatatagatcagtgtcctcaagtcggtgcattttatttgttcattcagttgagcttgaattagttggctctatgacatttata 44903058  T
Q  735 tgttttaccaaactgcccttgatttaaaatgaattttggtcttatttt-ttaattaatt 792  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  44903057 tgttttaccaacctgcccttgatttaaaatgaattttgatcttattttcttaattaatt 44902999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 794 - 886
Target Start/End: Original strand, 37038477 - 37038571
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||||| ||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  37038477 tagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 37038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 803 - 883
Target Start/End: Original strand, 5957838 - 5957919
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||||||| |||||||| ||||| | | ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  5957838 atacatagacattcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaa 5957919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 504213 - 504129
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  504213 atacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 504129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 12831055 - 12831139
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  12831055 atacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 12831139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 14547930 - 14548014
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  14547930 atacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 14548014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 890
Target Start/End: Complemental strand, 44507189 - 44507091
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagcatact 890  Q
    ||||||||| ||||||||||| |||||||||  |||| | ||||| ||| ||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  44507189 tagagtaatgatacatagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatact 44507091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 791 - 886
Target Start/End: Complemental strand, 40424048 - 40423951
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||| | ||||||||| ||||| | | ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  40424048 tttttgagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 40423951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 10284723 - 10284639
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||| ||| ||||| | ||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||    
T  10284723 atacatagacacccttaagtgacaatacactctttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagca 10284639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 15197341 - 15197425
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||  |||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  15197341 atacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 15197425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 34012388 - 34012304
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||||||  |||| | | ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||    
T  34012388 atacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagca 34012304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 44917430 - 44917387
Alignment:
Q  291 ctttggtatcacctgtttcacataaaaagatccattcaagacca 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44917430 ctttggtatcacctgtttcacataaaaagatccattcaagacca 44917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 1180032 - 1179948
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||||||  |||| | | ||||||| ||| |||||||||||||||||||||| |||||| |||||||||||    
T  1180032 atacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagca 1179948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 10621179 - 10621095
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||||||  |||| | | ||||||| ||| ||||||||||||||||||| ||| | |||||||||||||||    
T  10621179 atacatagacatccttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagca 10621095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 15048273 - 15048190
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | | ||||||| ||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  15048273 atacatagacatccttaggtggcaatacaccctttgaca-ccacacaaaaatctgacacgtagccacatggaccccgcacaagca 15048190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 23122689 - 23122605
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||| ||| ||||| | |||| |||| ||| |||||||||||||||||||||||||||| |||||| |||||    
T  23122689 atacatagacacccttaagtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagca 23122605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 8841493 - 8841440
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||    
T  8841493 ctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagca 8841440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 886
Target Start/End: Original strand, 9122237 - 9122277
Alignment:
Q  846 acaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  9122237 acaaaaatctgacatgtagtcacgtggatcccgcacaagca 9122277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 43414673 - 43414589
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||| || ||| | | | ||||||| ||| |||||||||| |||||| ||||| |||||||||||||||||    
T  43414673 atacatagacatccttagatggcaacacaccctttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagca 43414589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 803 - 884
Target Start/End: Original strand, 32032733 - 32032814
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaag 884  Q
    ||||||| ||| ||||||||| ||||| ||| |||||||||| |||||||||||||| || | ||  ||||||| |||||||    
T  32032733 atacataaacacccttaggtggcaatacatccttgacatccacacaaaaatctgacatgtggccatatggatcctgcacaag 32032814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 873
Target Start/End: Complemental strand, 14055684 - 14055613
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtgga 873  Q
    |||||| |||| ||||||||| ||||| | || |||||||||| |||||||||| ||| |||||||||||||    
T  14055684 atacattgacacccttaggtgacaatacactccttgacatccacacaaaaatcttacatgtagtcacgtgga 14055613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 792 - 886
Target Start/End: Original strand, 2740270 - 2740366
Alignment:
Q  792 tttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||||||||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  2740270 tttagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 2740366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 13811660 - 13811744
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  13811660 atacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 13811744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 15409702 - 15409618
Alignment:
Q  803 atacatagacatccttaggtgtcaatatat-ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  15409702 atacatagacatccttaggtgacaatacattctttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagca 15409618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 18520976 - 18520892
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  18520976 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 18520892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 31008996 - 31009080
Alignment:
Q  803 atacatagacatccttaggtgtcaatatat-ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||| ||||||||||||| ||||| || |||  ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  31008996 atacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 31009080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 35943984 - 35943900
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| ||| ||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||    
T  35943984 atacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagca 35943900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 40145415 - 40145499
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  40145415 atacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 40145499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 803 - 883
Target Start/End: Original strand, 35785207 - 35785288
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  35785207 atacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaa 35785288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 14831822 - 14831906
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||  |||||||| ||||| | | ||||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  14831822 atacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 14831906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 33149730 - 33149646
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||||||  |||| | | ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||    
T  33149730 atacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagca 33149646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 793 - 885
Target Start/End: Complemental strand, 41470519 - 41470425
Alignment:
Q  793 ttagagtaata-tacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagc 885  Q
    ||||||||||| |||||||||| | ||||||| ||||| ||| ||| | || |||| |||||||||||||||||||||||||| |||||||||||    
T  41470519 ttagagtaataatacatagacacctttaggtggcaatacatcctttaaaattcatataaaaatctgacacgtagtcacgtggaccccgcacaagc 41470425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 803 - 883
Target Start/End: Original strand, 28177783 - 28177864
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||||||||||||| ||||| | | ||||||| ||| ||||||||||||||||| ||||| |||| |||||||||    
T  28177783 atacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaa 28177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 36733043 - 36732950
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||  ||||| | | ||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||    
T  36733043 agagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagca 36732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 791 - 883
Target Start/End: Original strand, 6679693 - 6679787
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||| || ||||||||||||| ||||||| ||||| | |||| |||| ||| ||||||||||||||||| ||||| |||| |||||||||    
T  6679693 ttttagagttatgatacatagacatctttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaa 6679787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 840 - 890
Target Start/End: Original strand, 31132390 - 31132440
Alignment:
Q  840 atccatacaaaaatctgacacgtagtcacgtggatcccgcacaagcatact 890  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  31132390 atccacacaaaaatctgacaagtagtcacgtggaccccgcacaagcatact 31132440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 42414363 - 42414310
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||    
T  42414363 ctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 42414310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 3784003 - 3784087
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  3784003 atacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 3784087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 794 - 886
Target Start/End: Original strand, 3434560 - 3434654
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||||||||||||| ||||| | | ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  3434560 tagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagca 3434654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 786 - 886
Target Start/End: Original strand, 7389379 - 7389481
Alignment:
Q  786 attaattttagagtaat-atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||| ||| |||||||| ||||||||||| ||||||||| ||||| | ||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  7389379 attattttaagagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaa 7389478  T
Q  884 gca 886  Q
    |||    
T  7389479 gca 7389481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 19436288 - 19436195
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||||||||||||| ||||| | |||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  19436288 agagtaatgatacatagacatccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagca 19436195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 794 - 886
Target Start/End: Complemental strand, 36362015 - 36361921
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||    
T  36362015 tagagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagca 36361921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 19329850 - 19329934
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | |||| |||| ||| |||||||||||||||||| ||||||||| ||||||||||||    
T  19329850 atacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagca 19329934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 886
Target Start/End: Original strand, 36362024 - 36362118
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||| |||||||||  |||| ||| ||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||    
T  36362024 tagagtaatgatacatagacacccttaggtggtaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagca 36362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 791 - 886
Target Start/End: Original strand, 38267035 - 38267132
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||||| ||||| ||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  38267035 tttttgagtaatgatacatagacacccttatgtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38267132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 40957706 - 40957799
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| |||||||||||  |||||||| ||||| | ||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||    
T  40957706 agagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagca 40957799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 8080484 - 8080391
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| | | | |||||||||||||||||||||||||| ||||||||||||    
T  8080484 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagca 8080391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 38837216 - 38837309
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatctttg-acatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||| ||| | | |||||||||||||||||||||||||||| ||||||||||||    
T  38837216 agagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38837309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 32951585 - 32951501
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||  ||||| || ||||| ||| ||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  32951585 atacatagacactcttagatgacaatacatcctttaacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagca 32951501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 12310914 - 12310996
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||||||  |||||||||  || |||||||||||||||||||| || ||||||||||||| | |||||||    
T  12310914 atacatagacacccttaggtggaaatatatctg-gatatccatacaaaaatctgacatgtggtcacgtggatcctgaacaagca 12310996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 803 - 883
Target Start/End: Complemental strand, 4999606 - 4999525
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||| |||||| || ||||| | |||| |||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  4999606 atacatagacacccttagatggcaatacaccttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaa 4999525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 807 - 883
Target Start/End: Original strand, 35137545 - 35137622
Alignment:
Q  807 atagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||| ||||||||| ||||| | | ||||||| ||| |||||||||| ||||||||||||||||| |||||||||    
T  35137545 atagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaa 35137622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 886
Target Start/End: Original strand, 3694419 - 3694459
Alignment:
Q  846 acaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3694419 acaaaaatctgacacgtagtcatgtggatcccgcacaagca 3694459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 835 - 886
Target Start/End: Complemental strand, 16374883 - 16374832
Alignment:
Q  835 ttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||| ||||||||||||||||| |||||||||||| | ||||||||    
T  16374883 ttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagca 16374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 21234409 - 21234493
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| |  ||||||||  || |||||||| |||||||||| ||| || | ||||||||||||    
T  21234409 atacatagacatccttaggtgacaatacaccctttgacactcacacaaaaatttgacacgtagccacatgtaccccgcacaagca 21234493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 35522884 - 35522968
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||| ||| ||||| | | ||| ||| ||| ||||||||||||||||| | ||  |||||||||||||||||    
T  35522884 atacatagacatccttaagtggcaatacaccatttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagca 35522968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 46374894 - 46374810
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||| | | | ||| ||| ||| ||||||||||||||||| | ||| |||| ||||||||||||    
T  46374894 atacatagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaagca 46374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 885
Target Start/End: Original strand, 26296652 - 26296735
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagc 885  Q
    ||||||||||||||||||||| |||||||  |||| ||||||| | |||||||||| |||| | ||  |||| |||||||||||    
T  26296652 atacatagacatccttaggtgacaatataccctttaacatccacataaaaatctgatacgtggccatatggaccccgcacaagc 26296735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 792 - 886
Target Start/End: Complemental strand, 51898787 - 51898691
Alignment:
Q  792 tttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||||||| ||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  51898787 tttagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 51898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 791 - 886
Target Start/End: Complemental strand, 48716387 - 48716290
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| | | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  48716387 tttttgagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 48716290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 2581914 - 2582007
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  2581914 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 2582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 38632422 - 38632329
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatctttga-catccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | |||| | |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  38632422 agagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38632329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 27564827 - 27564743
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | |||| |||| ||| |||||||||||||||||| ||||||||| ||||||||||||    
T  27564827 atacatagacatccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagca 27564743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 803 - 883
Target Start/End: Complemental strand, 9474968 - 9474887
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  9474968 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaa 9474887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 37649206 - 37649290
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| | ||||||||| ||| ||||||||||||||||| |||||||| || |||||||||||    
T  37649206 atacatagacatctttaggtggcaatacactctttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagca 37649290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 44548468 - 44548384
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| | | ||||| | ||| |||||||||||||||||||||||||||| ||||||||||||    
T  44548468 atacatagacatctttaggtggcaatacaccatttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 44548384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 47452412 - 47452328
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||||||  |||| | | ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  47452412 atacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagca 47452328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 793 - 886
Target Start/End: Original strand, 50630455 - 50630550
Alignment:
Q  793 ttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||| ||||||||| | ||||||||| ||||| ||| ||||  | ||| |||||||||||||||||||||||||||| ||||||||||||    
T  50630455 ttagagtaatgatacatagatacccttaggtggcaatacatcctttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 50630550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 884
Target Start/End: Original strand, 26274440 - 26274522
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaag 884  Q
    ||||||||||| ||||| ||| ||||| ||| ||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  26274440 atacatagacacccttatgtggcaatacatcatttgacatccacagaaaaatctgacacatagtcacgtggatcctgcacaag 26274522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 43140 - 43224
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||  |||||| | ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||  |||||||||||    
T  43140 atacatagacagtcttaggagacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagca 43224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 3000327 - 3000411
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||| ||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| |||| |||||||    
T  3000327 atacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagca 3000411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 32813255 - 32813339
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | | ||| ||| ||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  32813255 atacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagca 32813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 8346489 - 8346396
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| |||||||| || | ||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| || |||||||||    
T  8346489 agagtaatgatacatagtcacctttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagca 8346396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Original strand, 38595193 - 38595246
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||| |||||||    
T  38595193 ctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagca 38595246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 837 - 886
Target Start/End: Original strand, 48489343 - 48489392
Alignment:
Q  837 gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||||    
T  48489343 gacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagca 48489392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 805 - 886
Target Start/End: Complemental strand, 11152467 - 11152386
Alignment:
Q  805 acatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||| ||||| | | || |||||||| |||||||||||||||||||||| || || ||||||||||||    
T  11152467 acatagaca-ccttaggtggcaatacacccttcgacatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagca 11152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 833 - 883
Target Start/End: Original strand, 41758844 - 41758894
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||| ||| ||||||||||||||||||||||| |||| |||||||||    
T  41758844 ctttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaa 41758894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 807 - 864
Target Start/End: Complemental strand, 49811615 - 49811557
Alignment:
Q  807 atagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtag 864  Q
    ||||||||||||||||| ||||| | | ||||||||||| |||||||||||||||||||    
T  49811615 atagacatccttaggtgacaatacaccatttgacatccacacaaaaatctgacacgtag 49811557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 833 - 886
Target Start/End: Original strand, 13414800 - 13414853
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||| ||||||||||||||||| ||| ||||||||    
T  13414800 ctttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagca 13414853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 814 - 883
Target Start/End: Complemental strand, 45044641 - 45044571
Alignment:
Q  814 tccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||||| ||||| | | ||||||| |||||||||||||||||| |||| ||| |||| |||||||||    
T  45044641 tccttaggtggcaatacaccatttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaa 45044571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 863
Target Start/End: Complemental strand, 3302625 - 3302564
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgta 863  Q
    ||||||| ||||||||||||| ||||||| || | |||| ||| ||||||||||||||||||    
T  3302625 atacatatacatccttaggtgacaatatattcctggacacccacacaaaaatctgacacgta 3302564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 50052529 - 50052436
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||||||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  50052529 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 50052436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 41236355 - 41236439
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | |||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  41236355 atacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 41236439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 42044468 - 42044375
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatctttg-acatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| ||| ||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  42044468 agagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 42044375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 6034052 - 6034136
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  6034052 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagca 6034136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 480548 - 480455
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| |||| |||||||    
T  480548 agagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagca 480455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 791 - 886
Target Start/End: Complemental strand, 11511567 - 11511470
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| | |||||||||||||||||||||||||| ||||||||||||    
T  11511567 tttttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagca 11511470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 29239885 - 29239978
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||    
T  29239885 agagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagca 29239978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 48183150 - 48183057
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||| ||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  48183150 agagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 48183057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 31910200 - 31910284
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||| ||||||||||||||| ||| ||| |||| ||||||||||||    
T  31910200 atacatagacatccttaggtgacaatacactctttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagca 31910284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 50526263 - 50526179
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| | | ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||    
T  50526263 atacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagca 50526179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 54473625 - 54473541
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||    
T  54473625 atacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagca 54473541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 3481662 - 3481746
Alignment:
Q  803 atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| | ||||||| ||||| | ||||||||| ||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  3481662 atacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagca 3481746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 886
Target Start/End: Complemental strand, 29234293 - 29234253
Alignment:
Q  846 acaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  29234293 acaaaaatctgacacgtagtcacgtggaccccgcacaagca 29234253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 890
Target Start/End: Complemental strand, 53352657 - 53352570
Alignment:
Q  803 atacatagacatccttaggtgtcaatatat-ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagcatact 890  Q
    ||||||||||| ||||||||| ||||| || |||| ||| | | |||||||||||||||||||| | ||||| ||||||||||||||||    
T  53352657 atacatagacacccttaggtg-caatacattctttaacacctacacaaaaatctgacacgtagttaagtggaccccgcacaagcatact 53352570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 24995168 - 24995115
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||    
T  24995168 ctttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagca 24995115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 833 - 886
Target Start/End: Original strand, 41823921 - 41823974
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||    
T  41823921 ctttaacacccacacaaaaatctgacacgtagtcacatggaccccgcacaagca 41823974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 795 - 871
Target Start/End: Original strand, 23608234 - 23608312
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtg 871  Q
    |||||||| ||| ||||||| |||||| || ||||| | | ||||||| ||| ||||||||||||||||||||||||||    
T  23608234 agagtaatgatatatagacacccttagatgacaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtg 23608312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 13438351 - 13438435
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  13438351 atacatagacacccttaggtgacaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 13438435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 794 - 886
Target Start/End: Complemental strand, 32505750 - 32505656
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  32505750 tagagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 32505656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 10249483 - 10249390
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  10249483 agagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 10249390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 4060693 - 4060777
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | |||| |||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  4060693 atacatagacacccttaggtgacaatacaccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagca 4060777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 17473028 - 17473112
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||||| || ||||| | | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  17473028 atacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 17473112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 28863463 - 28863547
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  28863463 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 28863547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 795 - 873
Target Start/End: Complemental strand, 38882914 - 38882835
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatctttgacatccatacaaaaatctgacacgtagtcacgtgga 873  Q
    |||||||| ||||||||||| ||||||||| |||||   |||||||||||| ||||||||||||||||||||||||||||    
T  38882914 agagtaatgatacatagacacccttaggtggcaataaccctttgacatccacacaaaaatctgacacgtagtcacgtgga 38882835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 886
Target Start/End: Complemental strand, 5574590 - 5574496
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| |||||||||||  |||||||| ||||| | | ||||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  5574590 tagagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 5574496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 9058479 - 9058572
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||    
T  9058479 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 9058572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 803 - 883
Target Start/End: Complemental strand, 19930912 - 19930831
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||| ||||||||| ||||| | | ||||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  19930912 atacatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaa 19930831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 33436201 - 33436108
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||    
T  33436201 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagca 33436108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 792 - 886
Target Start/End: Complemental strand, 7465839 - 7465743
Alignment:
Q  792 tttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||||| |||||| || ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||    
T  7465839 tttagagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagca 7465743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 803 - 883
Target Start/End: Original strand, 40701486 - 40701567
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||| ||||||| |||||||||    
T  40701486 atacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaa 40701567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 27864712 - 27864796
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||| ||| ||||| | | ||||||||||| |||||||||||||||||| ||||||||| |||||| |||||    
T  27864712 atacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagca 27864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 28381747 - 28381663
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | |||| |||| ||| ||||||||||||||||||||||| ||||  |||||||||||    
T  28381747 atacatagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagca 28381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 40613994 - 40613910
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | | ||||||| ||| ||||||||||||||||| | ||| |||| ||||||||||||    
T  40613994 atacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagca 40613910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 20700814 - 20700907
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||||||||| ||| ||||| | | ||||||  | | |||||||||||||||||||||||||||| |||||| |||||    
T  20700814 agagtaatgatacatagacatccttatgtggcaatacaccctttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagca 20700907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 30915462 - 30915555
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||  ||| | |||||||||||||||||||||||||| |||| |||||||    
T  30915462 agagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagca 30915555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 2533132 - 2533215
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||| ||| ||||| ||| ||||||| ||| ||||||||||||||||||| ||| | || ||||||||||||    
T  2533132 atacatagacatccttaagtggcaatacatcctttgaca-ccacacaaaaatctgacacgtagccacatagaccccgcacaagca 2533215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 42257201 - 42257285
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| ||| ||||||| ||| | ||||||||||||||| | ||| |||| ||||||||||||    
T  42257201 atacatagacatctttaggtggcaatacatcatttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagca 42257285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 890
Target Start/End: Original strand, 36168844 - 36168932
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagcatact 890  Q
    |||||||||||||||||| || ||||| ||| ||| ||  ||| |||||||| |||||||| | ||| |||| ||||||||||||||||    
T  36168844 atacatagacatccttagatgacaatacatcctttaactcccacacaaaaatttgacacgtggccacatggaccccgcacaagcatact 36168932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 803 - 884
Target Start/End: Complemental strand, 45097827 - 45097745
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatct-ttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaag 884  Q
    ||||||| ||||||||||||| ||||| |||  |||||| |||||||||||||||||| || | ||  |||| ||||||||||    
T  45097827 atacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaag 45097745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 794 - 886
Target Start/End: Original strand, 11427614 - 11427710
Alignment:
Q  794 tagagtaat-atacatagacatcct--taggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||| |||  |||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  11427614 tagagtaatgatacatagacaccctcttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 11427710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 17598562 - 17598646
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| |||||| |||| ||| ||||||||||||||||| |||||||||| ||||||||||||    
T  17598562 atacatagacacccttaggtggcaatacatcttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagca 17598646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 32869686 - 32869770
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  32869686 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 32869770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 22880750 - 22880666
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  22880750 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagca 22880666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 795 - 883
Target Start/End: Original strand, 15832576 - 15832666
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||| ||||||||||| | ||||||| ||||| ||| ||||||| ||| |||||||| |||||||||||||||||||||| ||||||    
T  15832576 agagtaatgatacatagacacctttaggtgacaataaatcatttgacacccacacaaaaatttgacacgtagtcacgtggatcctgcacaa 15832666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 23128188 - 23128135
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  23128188 ctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagca 23128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 31976256 - 31976340
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||||| | ||| ||| ||| ||||||||||||||||| ||||| || | ||||||||||||    
T  31976256 atacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagca 31976340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 807 - 880
Target Start/End: Complemental strand, 31109488 - 31109414
Alignment:
Q  807 atagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgca 880  Q
    ||||||| ||||||||| ||||| | | ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  31109488 atagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgca 31109414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 886
Target Start/End: Complemental strand, 6209566 - 6209473
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | |||||||  || ||||||||||| |||||||||||||||| ||||||| ||||    
T  6209566 agagtaatgatacatagacacccttaggtggcaatacactatttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagca 6209473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 886
Target Start/End: Original strand, 29857822 - 29857919
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatctttga-catccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||||| | |||| || ||||| | |||| | || ||| |||||||||||||||||||| |||||||||||||| |||||    
T  29857822 ttttggagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagca 29857919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 22422120 - 22422053
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatct-ttgacatccatacaaaaatctgaca 859  Q
    ||||||||| ||||||||||||||||||||| ||||| |||| ||||||  ||||||||| |||||||    
T  22422120 tagagtaatgatacatagacatccttaggtggcaatagatctcttgacactcatacaaaattctgaca 22422053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 875
Target Start/End: Complemental strand, 9379804 - 9379731
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatct-ttgacatccatacaaaaatctgacacgtagtcacgtggatc 875  Q
    |||||||||||||||||| || ||||| |||  |||||| |||||||||||| |||||||| | || |||||||    
T  9379804 atacatagacatccttagatgacaatacatcccttgacacccatacaaaaatttgacacgtggccatgtggatc 9379731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 862
Target Start/End: Original strand, 12732481 - 12732550
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgt 862  Q
    |||||||| |||||||||||| |||| ||| ||||||| || |||||| ||| |||||||||||||||||    
T  12732481 agagtaatgatacatagacattcttaagtggcaatataatcattgacacccacacaaaaatctgacacgt 12732550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 886
Target Start/End: Original strand, 49607413 - 49607506
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  49607413 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagca 49607506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 53982019 - 53982103
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  53982019 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 53982103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 33644208 - 33644292
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| |||| |||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  33644208 atacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 33644292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Original strand, 52629308 - 52629392
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||||| |||| |||||||    
T  52629308 atacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagca 52629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 833 - 883
Target Start/End: Original strand, 9563038 - 9563088
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  9563038 ctttgacatccatataaaaatctgacacgtagtcacgtggatcctgcacaa 9563088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 795 - 879
Target Start/End: Complemental strand, 36707525 - 36707439
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgc 879  Q
    |||||||| ||||||||| | ||||||||| ||||| | | ||||||||||| |||||||||||||||||||| |||||||||||||    
T  36707525 agagtaatgatacatagatacccttaggtgacaatacaccctttgacatccacacaaaaatctgacacgtagttacgtggatcccgc 36707439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 795 - 883
Target Start/End: Complemental strand, 54868996 - 54868906
Alignment:
Q  795 agagtaat-atacatagacatccttaggtgtcaatatatcttt-gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaa 883  Q
    |||||||| ||||||||||| ||||||||| ||||| | |||| |||| ||| |||||||||||||||||||| ||||||| |||||||||    
T  54868996 agagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaa 54868906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 784 - 870
Target Start/End: Complemental strand, 11095465 - 11095377
Alignment:
Q  784 taattaattttagagtaat-atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgt 870  Q
    ||||||| || |||||||| ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||||||||||||||||||||    
T  11095465 taattaaattaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgt 11095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 862
Target Start/End: Complemental strand, 11348014 - 11347954
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgt 862  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||    
T  11348014 atacatagacatccttaggtgacaatacatcctttgacatccacacaaaaatctgacacgt 11347954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 803 - 877
Target Start/End: Complemental strand, 33118943 - 33118868
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatccc 877  Q
    ||||||||||| ||||||||| ||||| | | ||||||| ||| |||||||| |||||||||||||||||||||||    
T  33118943 atacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatccc 33118868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 794 - 886
Target Start/End: Original strand, 17470403 - 17470497
Alignment:
Q  794 tagagtaat-atacatagacatccttaggtgtcaatatatctttga-catccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||| ||||||||||| | ||||||| ||||| | |||| | || ||| |||||||||||||||||||||||||||| ||| ||||||||    
T  17470403 tagagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagca 17470497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 803 - 884
Target Start/End: Complemental strand, 48587183 - 48587101
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaag 884  Q
    ||||||||| | ||||||||| ||||| | | ||||||| | | | |||||||||||||||||||||||||||||||||||||    
T  48587183 atacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaag 48587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Original strand, 8076432 - 8076485
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||    
T  8076432 ctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagca 8076485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Complemental strand, 27714952 - 27714899
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||    
T  27714952 ctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 27714899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 886
Target Start/End: Original strand, 31456728 - 31456781
Alignment:
Q  833 ctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||    
T  31456728 ctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 31456781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 26141624 - 26141540
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||||||||||| ||||| | | ||| ||| ||| ||||||||||||||||| ||||| |||| ||| ||||||||    
T  26141624 atacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagca 26141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 806 - 886
Target Start/End: Original strand, 26754706 - 26754787
Alignment:
Q  806 catagacatccttaggtgtcaatatatctttg-acatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| ||||||||| ||||| | | ||| ||||||| |||||||||||||| || ||||| |||| ||||||||||||    
T  26754706 catagacacccttaggtggcaatacacccttggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagca 26754787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 41189856 - 41189772
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| | |||||| |||||||| | ||| |||| ||||||||||||    
T  41189856 atacatatacatccttaggtggcaatacatcatttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagca 41189772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 51419452 - 51419368
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||| || ||||| ||| ||| ||| ||| ||||||||||||||||| | ||| | || ||||||||||||    
T  51419452 atacatagacatccttagatgacaatacatcctttaacacccacacaaaaatctgacacgtggccacatagaccccgcacaagca 51419368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 862
Target Start/End: Original strand, 39670012 - 39670079
Alignment:
Q  796 gagtaatatacatagacatccttaggtgtcaatatat-ctttgacatccatacaaaaatctgacacgt 862  Q
    |||| ||||||||||||||||||| ||| |||||||| | |||||||| ||| |||||| ||||||||    
T  39670012 gagttatatacatagacatccttatgtggcaatatatcccttgacatctatataaaaatttgacacgt 39670079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 886
Target Start/End: Complemental strand, 20765005 - 20764923
Alignment:
Q  805 acatagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||||||||||||||  |||| | ||||| ||| ||| ||||||||||||||||| | ||| |||| |||| |||||||    
T  20765005 acatagacatccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtggccacatggaccccgtacaagca 20764923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 1021 - 937
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| | | ||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  1021 atacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagca 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 1021 - 937
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||||| ||||||| ||||| | | ||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  1021 atacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagca 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 803 - 886
Target Start/End: Complemental strand, 10201 - 10117
Alignment:
Q  803 atacatagacatccttaggtgtcaatatatc-tttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    ||||||||||| | ||||||| ||||| ||| ||||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  10201 atacatagacacctttaggtggcaatacatcctttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagca 10117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 886
Target Start/End: Original strand, 4024 - 4121
Alignment:
Q  791 ttttagagtaat-atacatagacatccttaggtgtcaatatatctttga-catccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||| ||||||| ||||||||||| | |||| || ||||| | |||| | || ||| |||||||||||||||||||| |||||||||||||| |||||    
T  4024 ttttggagtaatgatacatagacacctttagatggcaatacaccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagca 4121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 884
Target Start/End: Complemental strand, 8951 - 8873
Alignment:
Q  807 atagacatccttaggtgtcaatata-tctttgacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaag 884  Q
    ||||||||||||| ||| ||||| | | ||||||||| | |||||||| |||||| |||||||||||| ||| ||||||    
T  8951 atagacatccttaagtgacaatacactatttgacatctacacaaaaatttgacacatagtcacgtggaccccacacaag 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 837 - 886
Target Start/End: Original strand, 17097 - 17146
Alignment:
Q  837 gacatccatacaaaaatctgacacgtagtcacgtggatcccgcacaagca 886  Q
    |||||||| |||||||||||||| || ||||| |||| ||||||||||||    
T  17097 gacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagca 17146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University