View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5632-Insertion-7 (Length: 142)
Name: NF5632-Insertion-7
Description: NF5632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5632-Insertion-7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 2e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 3178755 - 3178889
Alignment:
| Q |
8 |
ttatgcagctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagct |
107 |
Q |
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| T |
3178755 |
ttatgcagctggtttaacaatcaaagattacattaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagct |
3178854 |
T |
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| Q |
108 |
ccttctgttgtttcattttcttcaagaggaccaag |
142 |
Q |
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| T |
3178855 |
ccttctgttgtttcattttcttcaagaggaccaag |
3178889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 3240085 - 3239951
Alignment:
| Q |
8 |
ttatgcagctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagct |
107 |
Q |
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| T |
3240085 |
ttatgcagctggtttaacaatcaaagattacattaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagct |
3239986 |
T |
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| Q |
108 |
ccttctgttgtttcattttcttcaagaggaccaag |
142 |
Q |
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| T |
3239985 |
ccttctgttgtttcattttcttcaagaggaccaag |
3239951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 3231280 - 3231152
Alignment:
| Q |
14 |
agctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagctccttct |
113 |
Q |
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| T |
3231280 |
agctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgatattcaaaggaacagtaattggtgattctttagctccttct |
3231181 |
T |
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| Q |
114 |
gttgtttcattttcttcaagaggaccaag |
142 |
Q |
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| T |
3231180 |
gttgtttcattttcttcaagaggaccaag |
3231152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 3221049 - 3220919
Alignment:
| Q |
12 |
gcagctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagctcctt |
111 |
Q |
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| T |
3221049 |
gcagctggtttaacaatcaaagaatacataaaatcaacttacaatccatcagcaacattgatattcaaaggaacagtaattggtgattctttagctcctt |
3220950 |
T |
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| Q |
112 |
ctgttgtttcattttcttcaagaggaccaag |
142 |
Q |
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| T |
3220949 |
ctgttgtttcattttcttcaagaggaccaag |
3220919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 3226038 - 3225904
Alignment:
| Q |
8 |
ttatgcagctggtttaacaatcaaagattacataaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagct |
107 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
3226038 |
ttatgcagctggtttaacaatcaaatcttacataaaatcaacatacaatccgacagcaacattgatatttaaaggaacgataattggtgattctttagct |
3225939 |
T |
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| Q |
108 |
ccttctgttgtttcattttcttcaagaggaccaag |
142 |
Q |
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| T |
3225938 |
ccttctgttgtttacttttcttcaagaggaccaag |
3225904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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