View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633-Insertion-3 (Length: 336)
Name: NF5633-Insertion-3
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 39626861 - 39626533
Alignment:
| Q |
8 |
cagatctacttcttggagctttcaatcccatggttgatttaataaaacttaacactcataaaaagttattgaagtgtttactcatgtatgcaaaaagaac |
107 |
Q |
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| T |
39626861 |
cagatctacttcttggagctttcaatcccatggttgatttaataaaacttaacactcataaaaagttattgaagtgtttactcatgtatgcaaaaagaac |
39626762 |
T |
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| Q |
108 |
atctaaaacccataattgtcacatttaacatagtcaaccagaataagtactttttctccgtgaattcatgcttaaaatctatacagaacaactagttgtg |
207 |
Q |
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| T |
39626761 |
atctaaaacccatagttgtcacatttaacatagtcaaccagaataagtactttttctccgtgaattcatgcttataatctatacagaacaactagttgtg |
39626662 |
T |
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| Q |
208 |
aatgtccacccattacatacgctacggcttttatctttccaaataatttttgtactcacttaaatgctcctaaaagcaaaaaagctcagcgacaaacctt |
307 |
Q |
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| T |
39626661 |
aatgtccacccattacatacgctacggcttttatctttccaaataatttttgtacccacttaaatgctcctaaaagcaaaaaagctcagcgacaaacctt |
39626562 |
T |
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| Q |
308 |
ggcagtgtatagtgcttatttctggccct |
336 |
Q |
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| T |
39626561 |
ggcagtgtatagtgcttatttctggccct |
39626533 |
T |
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