View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5633_high_10 (Length: 411)
Name: NF5633_high_10
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 27437403 - 27437020
Alignment:
| Q |
20 |
tgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggtctcctacaatagtgtgagctttacaagcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
27437403 |
tgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgccagtctccaacaatagtgtgagctttacaagcg |
27437304 |
T |
|
| Q |
120 |
agacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaa-----ggttggtt |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
27437303 |
agacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattggatgatcatattcaacaagtcttgaaatgaaatgaaggttggta |
27437204 |
T |
|
| Q |
215 |
caagtatatgagatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcct |
314 |
Q |
| |
|
|| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27437203 |
catgtat--gagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcct |
27437106 |
T |
|
| Q |
315 |
ctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27437105 |
ctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcat |
27437020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 27945892 - 27945512
Alignment:
| Q |
20 |
tgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaa-cagtaaactatg-tcggtctcctacaatagtgtgagctttacaag |
117 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||||||| || || ||| ||||||||||| || |||||||| ||||||||||||| ||||| |
|
|
| T |
27945892 |
tgtagggtctttaaaatttgataagatatctcaagttcaaaatgaatgtagtaaacagtaaactatcatcagtctcctataatagtgtgagctcaacaag |
27945793 |
T |
|
| Q |
118 |
cgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaaggttggttcaa |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27945792 |
tgagacattatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaatgaaggttggttcaa |
27945693 |
T |
|
| Q |
218 |
gtatatgagatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctg |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27945692 |
gtat--gagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctg |
27945595 |
T |
|
| Q |
318 |
caaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27945594 |
caaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcat |
27945512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 27548867 - 27549022
Alignment:
| Q |
20 |
tgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggtctcctacaatagtgtgagctttacaagcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27548867 |
tgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcggtctcctacaatagtgtgagctttacaagcg |
27548966 |
T |
|
| Q |
120 |
agacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattg |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||| ||||||||||||| |
|
|
| T |
27548967 |
agacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattg |
27549022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 209 - 392
Target Start/End: Original strand, 27549020 - 27549201
Alignment:
| Q |
209 |
ttggttcaagtatatgagatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatattt |
308 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549020 |
ttggttcaagtat--gagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatattt |
27549117 |
T |
|
| Q |
309 |
cgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttc |
392 |
Q |
| |
|
||||| || |||||||| |||||||| || |||||||| ||||| ||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27549118 |
cgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttc |
27549201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 26766496 - 26766356
Alignment:
| Q |
252 |
gtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtct |
351 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || |||||||| || ||||||||||||| |
|
|
| T |
26766496 |
gtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtct |
26766397 |
T |
|
| Q |
352 |
caccccacgagtttttaacgatccaatacggcttctccttc |
392 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
26766396 |
caccccatgagtttttaattatccaatatggcttctccttc |
26766356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 27504001 - 27503968
Alignment:
| Q |
188 |
caacaagtcttgaaaggaaggttggttcaagtat |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
27504001 |
caacaagtcttgaaatgaaggttggttcaagtat |
27503968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 27504097 - 27504021
Alignment:
| Q |
114 |
caagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaattatcatatccaa |
190 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| || |||||| | |||||| |||||| || ||||||||||| |
|
|
| T |
27504097 |
caagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaa |
27504021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 7400625 - 7400539
Alignment:
| Q |
261 |
tgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaa |
347 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||||||||| | |||||| |||||||| |||||||| ||||| | ||| |||||| |
|
|
| T |
7400625 |
tgagctgcagcaacagtggagaccatggaatccactccacatacatttcggcctctgcagatcttgtaatatccttcctcaccccaa |
7400539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University