View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_high_15 (Length: 325)
Name: NF5633_high_15
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 50968977 - 50969291
Alignment:
| Q |
1 |
catataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggtaatcaatgagcagaggtatatatctt |
100 |
Q |
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| T |
50968977 |
catataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggtaatcaatgagcagaggtatatatctt |
50969076 |
T |
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| Q |
101 |
tttacatattatatatgaggctgcaagcttagaaattaggttaggtttatctcaaccctaatattatatccgagagagagtgagacgatggggtttattt |
200 |
Q |
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| T |
50969077 |
tttacatattatatatgaggctgcaagcttagaaattaggttaggtttatctcaaccctaatattatatccgagagagagtgagacgatggggtttattt |
50969176 |
T |
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| Q |
201 |
tttgacaaggttgatgcatggggttaagaaactagggttggtttggtttaattaatttttaaccattaccaaaacaaggtgatatggaatcaatcaatca |
300 |
Q |
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| T |
50969177 |
tttgacaaggttgatgcatggggttaagagactagggttggtttggtttaattaatttttaaccattaccaaaacaaggtgatatggaatcaatcaatca |
50969276 |
T |
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| Q |
301 |
aattgggagtataat |
315 |
Q |
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| T |
50969277 |
atttgggagtataat |
50969291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 50973808 - 50973989
Alignment:
| Q |
4 |
ataccggtagttaaaacaaactgacagcaccatttgtcaacgttgaagaaacttgaatctttgggaaaggtaatcaatgagca-gaggtatatatctttt |
102 |
Q |
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| T |
50973808 |
atacccgtagttaaaacaaactaacggcaccatttgtctacgttgaagaaatatgaatctttgcgaaaggtaattaaggagcataaggtatctatccttt |
50973907 |
T |
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| Q |
103 |
tacatattatatatgaggctgcaagcttagaaattaggttaggttta--tctcaaccctaatattatatccgagagagagtg |
182 |
Q |
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| T |
50973908 |
cacatattatatctgcggcggcaagcttagaaactaggttaggtctatttctcaaccctaatattatatctgagagaaagtg |
50973989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 50974009 - 50974072
Alignment:
| Q |
175 |
agagagtgagacgatggggtttattttttgacaaggttgatgcatggggttaagaaactagggtt |
239 |
Q |
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| T |
50974009 |
agagagtgagacggtggggtttattttttgacaagg-tgaggcgtggagttaagaaactagggtt |
50974072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 50974071 - 50974110
Alignment:
| Q |
259 |
ttaaccattaccaaaacaaggtgatatggaatcaatcaat |
298 |
Q |
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| T |
50974071 |
ttaaccattaccaaaacaaggtgatacggaattaatcaat |
50974110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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