View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5633_high_4 (Length: 542)
Name: NF5633_high_4
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 24 - 527
Target Start/End: Complemental strand, 36377308 - 36376818
Alignment:
| Q |
24 |
gccgcggcagcacaatcagccgcaactctcaatgctcgaaccacaaaggaagaggacaagaccaaacttggtgatattcttgcggtacataccagacann |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36377308 |
gccgcggcagcacaatcagctgcaactctcaatgctcgaaccacaaaggaagaggacaagaccaaactcggtgatattcttgcggtacataccagaca-- |
36377211 |
T |
|
| Q |
124 |
nnnnnacatttaaagagtcttgctacaaaagttatacacactaaatacttgaaagtgcagaattgcagatttaaatctgcgctccaacatcaaacatctt |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
36377210 |
--------tttaaagagtcttgcaacaaaagttatacacactaaatacttgaaagtgcagagttgcagatttaaatccgctctccaacatcaaacatctt |
36377119 |
T |
|
| Q |
224 |
tgcagttattttttactatctgcacatacaagaattttaggttgctaatatatttgaattgttataatgatgcaggacgcgactacaaagttaccggcag |
323 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36377118 |
tgcagttattttttactatccgcacatacaagaattttaggtt------atatttgaattgttataatgatgcaggacgcgactacaaagttaccggcag |
36377025 |
T |
|
| Q |
324 |
atagagcagcgacaaggagagacgctgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtctgcatcaat |
423 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36377024 |
atagagcagcgacaaggagagatgccgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtcagcatcaat |
36376925 |
T |
|
| Q |
424 |
ggcagccgcagctaggcttaatcaaaagaataacaactagttgctaccttagtagttagctaccttatatatgtatattaatgg---ttatgcttttctg |
520 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36376924 |
ggcagccgcagctaggcttaaccaaaagaataacaactagttgctacctaagtagttagctaccttatatatgtatattaatggttattatgcttttctg |
36376825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University