View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_high_5 (Length: 503)
Name: NF5633_high_5
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 5051554 - 5052046
Alignment:
| Q |
1 |
tggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggttttcttctt- |
99 |
Q |
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| T |
5051554 |
tggtttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttc |
5051653 |
T |
|
| Q |
100 |
--tcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagatta------agaagcgctttgcgatggatttg |
191 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5051654 |
tttcatttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttg |
5051753 |
T |
|
| Q |
192 |
catctcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagatt |
291 |
Q |
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| T |
5051754 |
catctcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagatt |
5051853 |
T |
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| Q |
292 |
gtatgttcacgagctattacctaccaaattttaattggataatggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattat |
391 |
Q |
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| T |
5051854 |
gtatgttcacgagctattacctaccaaatttaaattggataattgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattat |
5051953 |
T |
|
| Q |
392 |
gtattattgctgacttgattgatcccggccccaatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaac |
484 |
Q |
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| T |
5051954 |
gtattgttgctgacttgattgatcccggccccgatcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaac |
5052046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 51273806 - 51273452
Alignment:
| Q |
8 |
caggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctactttt-ctggttttctt---ctttcat |
103 |
Q |
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||||||||||||||| |||||| | ||| ||||| | ||| |||||| ||||||||||||||||||||||| | |||| ||||||||||| ||||||| |
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| T |
51273806 |
caggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctttcat |
51273707 |
T |
|
| Q |
104 |
ttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagattaa------gaagcgctttgcgatggatttgcatctc |
197 |
Q |
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| T |
51273706 |
ttgttggagcaaagtat---ggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagatggatttgcaactc |
51273610 |
T |
|
| Q |
198 |
actcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattg-tat |
295 |
Q |
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||| |||||||||| | | |||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| ||||||||||||||| | |||| ||| |
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| T |
51273609 |
actgctgtcttgtacgaaacacgactccatatctctatcaataaatcatctgataaattctccatgttgattttagtatatattgctagaatattgttat |
51273510 |
T |
|
| Q |
296 |
gttcacgagctattacctaccaaattttaattggataatggattttgatacttagttg |
353 |
Q |
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| T |
51273509 |
gttcaagagctataagctaccaaattttaattggataatcgattctgatacttggttg |
51273452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
167 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
265 |
Q |
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||||| |||||||| |||||||||| | |||||| ||| ||||||| | ||||| ||||| |||| ||| ||| |||||||||||| |||||||||||| |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
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| Q |
266 |
attgtagtatatattgcta |
284 |
Q |
| |
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||| |||||||||||||| |
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| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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