View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5633_low_1 (Length: 600)
Name: NF5633_low_1
Description: NF5633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5633_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Original strand, 30394822 - 30395395
Alignment:
| Q |
10 |
catcatcaagtacatcaatgtcactctcactttggactatcactcgtggcgcacgaacagctctccgaggcagcattgtttcaaccgggtagctctcctt |
109 |
Q |
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| T |
30394822 |
catcatcaagtacatcaatgtcactctcactttggactatcactcgtggcgcacgaacagccctccgaggcagcattgtttcaaccgggtagctctcctt |
30394921 |
T |
|
| Q |
110 |
cttcctgcaacagaaaattaaaccaacaacgtatatagattgtctttctatttgtattgtcaatgctaagatgaagacagtatcagataaaatacaatac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
30394922 |
cttcctgcaacagaaaattaaaccaacaacgtatatagattgtctttctatttgtattgccaatgctaacatgaagacagtatcagataaaatacaatac |
30395021 |
T |
|
| Q |
210 |
cttcttttcgattctgagtcggcatcggaattgttttcaggagtggctccatctttatcaccatcatgattatcaagtgcggaagaatgctcctgagcat |
309 |
Q |
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| T |
30395022 |
cttcttttcgattctgagtcggcatcggaattgttttcaggagtggctccatctttatcaccatcatgattatcaagtgcggaagaatgctcctgagcgt |
30395121 |
T |
|
| Q |
310 |
tgtctgattcaaacataccttgagatctagctctcttcataggatccgaaagcccggtgacatcagaaggttgggatgtcctttcttgaccatctggctt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30395122 |
cgtctgattcaaacataccttgagatctagctctcttcataggatccgaaagcccggtgacatcagaaggttgggatgtcctttcttgaccatcaggctt |
30395221 |
T |
|
| Q |
410 |
ccattccggattgtgttttgcatcttttcctcgcggctgaatgtttccccgtgtttcattggcttcagcattttctgacatttcatcactagaaggtact |
509 |
Q |
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| T |
30395222 |
ccattccggattgtgttttgcatcttttcctcgcgactgaatgtttccccgtgtttcattggcttcagcattttctgacatttcatcactagaaggtact |
30395321 |
T |
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| Q |
510 |
gatcctcgacgacttgaatttggttttgcatggttgtgattaccactgtaaataatttctcttatgttgccatc |
583 |
Q |
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| T |
30395322 |
gatcctcgacgacttgaatttggttttgcatggttatgattaccactgtaaataatttctcttatgttgccatc |
30395395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 30408438 - 30408905
Alignment:
| Q |
10 |
catcatcaagtacatcaatgtcactctcactttggactatcactcgtggcgcacgaacagctctccgaggcagcattgtttcaaccgggtagctctcctt |
109 |
Q |
| |
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|||||||||||| || |||||||||||| ||||||||| |||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
30408438 |
catcatcaagtatgtcgatgtcactctcaatttggactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggtagctctcctt |
30408537 |
T |
|
| Q |
110 |
cttcctgcaacagaaaattaaaccaacaacgtatatagattgtctttctatttgtattgtcaatgctaagatgaagacagtatcagataaaatacaatac |
209 |
Q |
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|||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||| |||||| | |||||||||||| |||||||| |||| ||| |
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| T |
30408538 |
cttcctgcaacagaaaattaaaccaacaacatacatagactgtctctctatttgtattgccaatgccagcatgaagacagtagcagataaagtacagtac |
30408637 |
T |
|
| Q |
210 |
cttcttttcgattctgagtcggca---tcggaattgttttcag---------------gagtggctccatctttatcaccatcatgattatcaagtgcgg |
291 |
Q |
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| T |
30408638 |
cttcttttcgattctgaatcggcatcttcaggattgttttcaggtgataggactgcttgagtggctccatctttatcaccatcatgattaccaagtgctg |
30408737 |
T |
|
| Q |
292 |
aagaatgctcctgagcattgtctgattcaaacataccttgagatctagctctcttcataggatccgaaagcccggtgacatcagaaggttgggatgtcct |
391 |
Q |
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||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| |||||||||| |
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| T |
30408738 |
aagaatgctccggagcgttgtccgattcaaacataccttgagatctagctctcttcataggatctgaaagctcggtcacaccagaaggcggggatgtcct |
30408837 |
T |
|
| Q |
392 |
ttcttgaccatctggcttccattccggattgtgttttgcatcttttcctcgcggctgaatgtttcccc |
459 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||| || | | |||||||||||||| |
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| T |
30408838 |
ttcttgaccatcaggcttccgttccggattgtgttttgcatctttcccccatgactgaatgtttcccc |
30408905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 461 - 583
Target Start/End: Original strand, 30408934 - 30409056
Alignment:
| Q |
461 |
tgtttcattggcttcagcattttctgacatttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttgtgattaccactgtaa |
560 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
30408934 |
tgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacttgaatgtggttttgcatggttatgattacccttgtaa |
30409033 |
T |
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| Q |
561 |
ataatttctcttatgttgccatc |
583 |
Q |
| |
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||||||||| |||||| |||||| |
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| T |
30409034 |
ataatttctgttatgtggccatc |
30409056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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